Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19700

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
3,741,429	+	zapB	LU632_RS19695	0.35	-2.1
3,741,429	+	zapB	LU632_RS19695	0.35	-0.7
3,741,430	-	zapB	LU632_RS19695	0.35	-1.1
3,741,531	-	zapB	LU632_RS19695	0.78	+1.3
3,741,551	+	zapB	LU632_RS19695	0.86	-0.9
3,741,590	+				-0.5
3,741,591	-				+0.6
3,741,670	+				+1.7
3,741,670	+				+2.0
3,741,670	+				-2.8
3,741,670	+				+0.4
3,741,671	-				+0.0
3,741,671	-				+1.8
3,741,674	+				+0.1
3,741,675	-				+2.3
3,741,769	+				+0.6
3,741,948	-				+3.6
3,741,993	+				-0.2
3,742,084	+				+0.5
3,742,085	-				-0.5
3,742,160	-		LU632_RS19700	0.17	-1.3
3,742,190	+		LU632_RS19700	0.20	-0.1
3,742,190	+		LU632_RS19700	0.20	+3.2
3,742,286	+		LU632_RS19700	0.31	+0.0
3,742,286	+		LU632_RS19700	0.31	+1.8
3,742,286	+		LU632_RS19700	0.31	-0.5
3,742,286	+		LU632_RS19700	0.31	-1.6
3,742,287	-		LU632_RS19700	0.32	-3.0
3,742,287	-		LU632_RS19700	0.32	+2.6
3,742,288	+		LU632_RS19700	0.32	+0.8
3,742,433	+		LU632_RS19700	0.49	+2.3
3,742,456	-		LU632_RS19700	0.51	+0.6
3,742,693	+		LU632_RS19700	0.79	-1.0
3,742,709	-		LU632_RS19700	0.81	+4.2
3,742,777	+		LU632_RS19700	0.89	-0.1
3,742,777	+		LU632_RS19700	0.89	+0.6
3,742,777	+		LU632_RS19700	0.89	+1.7
3,742,778	-		LU632_RS19700	0.89	-1.9
3,742,778	-		LU632_RS19700	0.89	-0.5
3,742,778	-		LU632_RS19700	0.89	+1.5
3,742,858	+				-1.0
3,742,859	-				+0.3
3,742,866	-				-1.8
3,743,197	+	glpK	LU632_RS19705	0.20	+1.8
3,743,273	-	glpK	LU632_RS19705	0.25	+2.0
3,743,275	-	glpK	LU632_RS19705	0.25	+1.0
3,743,527	-	glpK	LU632_RS19705	0.41	+1.5
3,743,699	-	glpK	LU632_RS19705	0.53	-1.3
3,743,715	+	glpK	LU632_RS19705	0.54	+0.0
3,743,728	-	glpK	LU632_RS19705	0.55	+1.3
3,743,804	-	glpK	LU632_RS19705	0.60	+1.0
3,743,804	-	glpK	LU632_RS19705	0.60	+0.8