Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18425

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
3,481,683	+		LU632_RS18415	0.44	-1.4
3,481,683	+		LU632_RS18415	0.44	-0.2
3,481,684	-		LU632_RS18415	0.45	+1.3
3,481,684	-		LU632_RS18415	0.45	+0.2
3,481,721	+		LU632_RS18415	0.52	+1.7
3,481,946	-				-1.1
3,481,954	+				+0.9
3,481,955	-				-2.2
3,481,979	+				-0.0
3,482,025	-				-0.1
3,482,025	-				-1.6
3,482,025	-				-2.1
3,482,026	+				-1.2
3,482,366	+		LU632_RS18420	0.60	-1.9
3,482,462	-		LU632_RS18420	0.75	-3.6
3,482,593	-				-0.6
3,482,593	-				-3.3
3,482,594	+				-1.1
3,482,594	+				-3.2
3,482,594	+				-0.1
3,482,595	-				+0.9
3,482,637	-				-0.4
3,482,640	+				-0.2
3,482,640	+				-0.8
3,482,640	+				-1.5
3,482,641	-				+1.1
3,482,641	-				+2.7
3,482,641	-				+1.6
3,482,749	+		LU632_RS18425	0.17	-2.5
3,482,750	-		LU632_RS18425	0.17	+1.0
3,482,762	-		LU632_RS18425	0.19	+2.1
3,482,798	+		LU632_RS18425	0.23	+0.3
3,483,330	+				-0.1
3,483,330	-				+0.5
3,483,351	+				-1.8
3,483,351	+				-2.2
3,483,351	+				-0.8
3,483,351	+				-2.9
3,483,352	-				-3.9
3,483,369	+				+0.2
3,483,534	+				-1.2
3,483,535	-				+1.1
3,483,535	-				-1.0
3,483,541	+				-0.1
3,483,635	+		LU632_RS18430	0.13	-3.0
3,483,686	+		LU632_RS18430	0.19	+0.3
3,483,686	+		LU632_RS18430	0.19	+5.0
3,483,687	-		LU632_RS18430	0.19	+4.2
3,483,687	-		LU632_RS18430	0.19	+0.9
3,483,691	+		LU632_RS18430	0.19	+2.4
3,483,692	-		LU632_RS18430	0.19	+0.9
3,483,729	-		LU632_RS18430	0.24	+1.7
3,483,748	+		LU632_RS18430	0.26	+0.3
3,483,748	+		LU632_RS18430	0.26	+1.5
3,483,777	-		LU632_RS18430	0.29	-1.5
3,483,884	+		LU632_RS18430	0.41	-0.3
3,483,933	+		LU632_RS18430	0.46	+1.2
3,484,073	+		LU632_RS18430	0.61	+1.4
3,484,073	+		LU632_RS18430	0.61	+1.5
3,484,074	-		LU632_RS18430	0.62	+2.9
3,484,248	-		LU632_RS18430	0.81	+0.5
3,484,308	+		LU632_RS18430	0.87	+2.8
3,484,308	+		LU632_RS18430	0.87	+0.2
3,484,309	-		LU632_RS18430	0.88	+2.0