Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17425

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17420 and LU632_RS17425 are separated by 241 nucleotidesLU632_RS17425 and LU632_RS17430 are separated by 67 nucleotidesLU632_RS17430 and LU632_RS17435 are separated by 91 nucleotides LU632_RS17420: LU632_RS17420 - phosphatidylinositol-specific phospholipase C domain-containing protein, at 3,274,040 to 3,274,858 _RS17420 LU632_RS17425: LU632_RS17425 - CyaA/EF/ExoY family adenylyl cyclase toxin, at 3,275,100 to 3,281,711 _RS17425 LU632_RS17430: LU632_RS17430 - recombinase family protein, at 3,281,779 to 3,282,420 _RS17430 LU632_RS17435: LU632_RS17435 - DUF2913 family protein, at 3,282,512 to 3,282,799 _RS17435 Position (kb) 3275 3276 3277 3278 3279 3280 3281 3282Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3274.260 kb on - strand, within LU632_RS17420at 3275.481 kb on - strandat 3275.849 kb on + strand, within LU632_RS17425at 3275.999 kb on + strand, within LU632_RS17425at 3276.151 kb on + strand, within LU632_RS17425at 3277.721 kb on - strand, within LU632_RS17425at 3277.881 kb on - strand, within LU632_RS17425at 3277.986 kb on + strand, within LU632_RS17425at 3278.158 kb on - strand, within LU632_RS17425at 3278.246 kb on + strand, within LU632_RS17425at 3278.326 kb on + strand, within LU632_RS17425at 3278.393 kb on + strand, within LU632_RS17425at 3278.394 kb on - strand, within LU632_RS17425at 3278.585 kb on + strand, within LU632_RS17425at 3278.589 kb on + strand, within LU632_RS17425at 3278.960 kb on + strand, within LU632_RS17425at 3279.338 kb on - strand, within LU632_RS17425at 3279.750 kb on - strand, within LU632_RS17425at 3279.759 kb on - strand, within LU632_RS17425at 3280.299 kb on + strand, within LU632_RS17425at 3280.434 kb on - strand, within LU632_RS17425at 3280.434 kb on - strand, within LU632_RS17425at 3280.436 kb on - strand, within LU632_RS17425at 3280.436 kb on - strand, within LU632_RS17425at 3280.436 kb on - strand, within LU632_RS17425at 3281.793 kb on + strandat 3281.794 kb on - strandat 3281.801 kb on + strandat 3281.802 kb on - strandat 3281.888 kb on + strand, within LU632_RS17430at 3281.888 kb on + strand, within LU632_RS17430at 3281.888 kb on + strand, within LU632_RS17430at 3281.889 kb on - strand, within LU632_RS17430at 3282.003 kb on + strand, within LU632_RS17430at 3282.232 kb on - strand, within LU632_RS17430at 3282.257 kb on - strand, within LU632_RS17430at 3282.312 kb on - strand, within LU632_RS17430at 3282.443 kb on + strandat 3282.444 kb on - strandat 3282.444 kb on - strandat 3282.444 kb on - strandat 3282.481 kb on + strandat 3282.514 kb on - strandat 3282.580 kb on + strand, within LU632_RS17435at 3282.583 kb on + strand, within LU632_RS17435at 3282.584 kb on - strand, within LU632_RS17435at 3282.669 kb on - strand, within LU632_RS17435at 3282.669 kb on - strand, within LU632_RS17435at 3282.669 kb on - strand, within LU632_RS17435at 3282.669 kb on - strand, within LU632_RS17435at 3282.669 kb on - strand, within LU632_RS17435

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
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3,274,260 - LU632_RS17420 0.27 +1.3
3,275,481 - +1.2
3,275,849 + LU632_RS17425 0.11 +0.7
3,275,999 + LU632_RS17425 0.14 -0.7
3,276,151 + LU632_RS17425 0.16 +0.6
3,277,721 - LU632_RS17425 0.40 +2.0
3,277,881 - LU632_RS17425 0.42 +2.3
3,277,986 + LU632_RS17425 0.44 +1.7
3,278,158 - LU632_RS17425 0.46 +5.4
3,278,246 + LU632_RS17425 0.48 -0.7
3,278,326 + LU632_RS17425 0.49 -0.9
3,278,393 + LU632_RS17425 0.50 +3.3
3,278,394 - LU632_RS17425 0.50 -0.5
3,278,585 + LU632_RS17425 0.53 +1.4
3,278,589 + LU632_RS17425 0.53 +0.4
3,278,960 + LU632_RS17425 0.58 -0.6
3,279,338 - LU632_RS17425 0.64 +1.6
3,279,750 - LU632_RS17425 0.70 -2.9
3,279,759 - LU632_RS17425 0.70 -0.3
3,280,299 + LU632_RS17425 0.79 -0.1
3,280,434 - LU632_RS17425 0.81 -1.6
3,280,434 - LU632_RS17425 0.81 +0.5
3,280,436 - LU632_RS17425 0.81 -1.7
3,280,436 - LU632_RS17425 0.81 -0.2
3,280,436 - LU632_RS17425 0.81 +1.4
3,281,793 + +3.0
3,281,794 - -1.6
3,281,801 + -1.3
3,281,802 - -0.8
3,281,888 + LU632_RS17430 0.17 -0.0
3,281,888 + LU632_RS17430 0.17 +2.6
3,281,888 + LU632_RS17430 0.17 -0.2
3,281,889 - LU632_RS17430 0.17 -0.1
3,282,003 + LU632_RS17430 0.35 -2.7
3,282,232 - LU632_RS17430 0.71 +3.1
3,282,257 - LU632_RS17430 0.74 +0.6
3,282,312 - LU632_RS17430 0.83 +0.4
3,282,443 + -0.5
3,282,444 - +0.4
3,282,444 - +0.3
3,282,444 - -1.8
3,282,481 + -0.1
3,282,514 - +4.0
3,282,580 + LU632_RS17435 0.24 +3.6
3,282,583 + LU632_RS17435 0.25 -1.3
3,282,584 - LU632_RS17435 0.25 +1.1
3,282,669 - LU632_RS17435 0.55 +1.8
3,282,669 - LU632_RS17435 0.55 +2.2
3,282,669 - LU632_RS17435 0.55 +0.8
3,282,669 - LU632_RS17435 0.55 +0.4
3,282,669 - LU632_RS17435 0.55 +2.5

Or see this region's nucleotide sequence