Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17320

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
3,255,070	-	fruA	LU632_RS17315	0.53	-1.8
3,255,070	-	fruA	LU632_RS17315	0.53	-1.7
3,255,140	+	fruA	LU632_RS17315	0.58	-1.6
3,255,140	+	fruA	LU632_RS17315	0.58	+0.8
3,255,141	-	fruA	LU632_RS17315	0.58	-1.4
3,255,213	+	fruA	LU632_RS17315	0.62	-2.0
3,255,297	+	fruA	LU632_RS17315	0.67	-0.3
3,255,308	+	fruA	LU632_RS17315	0.67	+0.3
3,255,308	+	fruA	LU632_RS17315	0.67	-1.7
3,255,319	-	fruA	LU632_RS17315	0.68	-0.8
3,255,348	+	fruA	LU632_RS17315	0.70	+1.8
3,255,348	+	fruA	LU632_RS17315	0.70	-2.7
3,255,349	-	fruA	LU632_RS17315	0.70	-1.2
3,255,364	-	fruA	LU632_RS17315	0.71	-1.7
3,255,496	-	fruA	LU632_RS17315	0.78	-2.6
3,255,496	-	fruA	LU632_RS17315	0.78	-0.7
3,255,496	-	fruA	LU632_RS17315	0.78	-0.6
3,255,652	+	fruA	LU632_RS17315	0.88	-2.0
3,255,653	-	fruA	LU632_RS17315	0.88	+0.1
3,255,653	-	fruA	LU632_RS17315	0.88	-0.7
3,255,706	-				-2.4
3,255,711	+				+2.4
3,255,711	+				-2.0
3,255,711	+				-1.5
3,255,712	-				-2.3
3,255,799	-				-2.0
3,255,844	+				-1.5
3,255,845	-				-0.5
3,255,862	+				-1.2
3,255,862	+				-1.5
3,255,863	-				-1.2
3,255,863	-				-1.7
3,255,882	+				-0.2
3,255,892	+				-2.7
3,255,892	+				-1.1
3,255,892	+				-1.5
3,256,028	+	fruK	LU632_RS17320	0.16	-3.9
3,256,201	+	fruK	LU632_RS17320	0.35	-2.2
3,256,201	+	fruK	LU632_RS17320	0.35	+0.8
3,256,202	-	fruK	LU632_RS17320	0.35	-0.7
3,256,323	+	fruK	LU632_RS17320	0.47	-2.9
3,256,324	-	fruK	LU632_RS17320	0.48	-0.7
3,256,548	+	fruK	LU632_RS17320	0.71	-2.2
3,256,549	-	fruK	LU632_RS17320	0.72	-2.0
3,257,016	-	fruB	LU632_RS17325	0.18	+0.1
3,257,179	+	fruB	LU632_RS17325	0.32	-2.5
3,257,179	+	fruB	LU632_RS17325	0.32	-3.3
3,257,179	+	fruB	LU632_RS17325	0.32	+1.8
3,257,180	-	fruB	LU632_RS17325	0.32	-1.2
3,257,180	-	fruB	LU632_RS17325	0.32	-1.7
3,257,182	-	fruB	LU632_RS17325	0.33	+1.8
3,257,198	-	fruB	LU632_RS17325	0.34	+1.7
3,257,198	-	fruB	LU632_RS17325	0.34	-2.2
3,257,477	+	fruB	LU632_RS17325	0.59	-2.6
3,257,606	+	fruB	LU632_RS17325	0.70	-0.2
3,257,607	-	fruB	LU632_RS17325	0.70	-0.7
3,257,650	-	fruB	LU632_RS17325	0.74	-1.4
3,257,665	+	fruB	LU632_RS17325	0.75	+1.5
3,257,726	+	fruB	LU632_RS17325	0.81	-4.3
3,257,726	+	fruB	LU632_RS17325	0.81	-1.2
3,257,730	+	fruB	LU632_RS17325	0.81	-3.2
3,257,788	+	fruB	LU632_RS17325	0.86	+0.5
3,257,788	+	fruB	LU632_RS17325	0.86	-1.5
3,257,789	-	fruB	LU632_RS17325	0.86	-1.1
3,257,792	+	fruB	LU632_RS17325	0.86	+0.3
3,257,792	+	fruB	LU632_RS17325	0.86	-1.3
3,257,792	+	fruB	LU632_RS17325	0.86	-2.3
3,257,792	+	fruB	LU632_RS17325	0.86	-1.6