Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16540

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
3,132,485	+		LU632_RS16525	0.76	+1.0
3,132,701	-				+0.1
3,132,723	+				+2.4
3,132,723	+				+0.8
3,132,723	+				+1.6
3,132,724	-				-1.5
3,132,759	+				+0.9
3,132,785	+				-1.8
3,132,804	+				-0.6
3,132,978	+		LU632_RS16530	0.48	+0.3
3,132,978	+		LU632_RS16530	0.48	+0.7
3,132,979	-		LU632_RS16530	0.49	+0.4
3,132,984	-		LU632_RS16530	0.52	-2.0
3,133,042	+		LU632_RS16530	0.89	+0.7
3,133,042	+		LU632_RS16530	0.89	+0.6
3,133,042	+		LU632_RS16530	0.89	-2.2
3,133,042	+		LU632_RS16530	0.89	-4.3
3,133,042	+		LU632_RS16530	0.89	-0.7
3,133,043	-				+0.3
3,133,043	-				+0.1
3,133,043	-				+1.4
3,133,046	+				-0.0
3,133,046	+				+2.5
3,133,046	+				+1.1
3,133,047	-				-0.6
3,133,057	-				-2.6
3,133,126	+				-0.8
3,133,157	+				-2.0
3,133,187	+				-0.6
3,133,188	-				+2.6
3,133,192	+				+0.5
3,133,196	+				-0.6
3,133,199	+		LU632_RS16535	0.11	-0.2
3,133,215	+		LU632_RS16535	0.18	-1.4
3,133,216	-		LU632_RS16535	0.19	-2.3
3,133,263	+		LU632_RS16535	0.40	-2.6
3,133,263	+		LU632_RS16535	0.40	-0.6
3,133,263	+		LU632_RS16535	0.40	-0.2
3,133,366	-		LU632_RS16535	0.87	+1.0
3,133,366	-		LU632_RS16535	0.87	-2.5
3,133,366	-		LU632_RS16535	0.87	-0.2
3,133,366	-		LU632_RS16535	0.87	+0.6
3,133,499	+		LU632_RS16540	0.35	+0.0
3,133,499	+		LU632_RS16540	0.35	-2.0
3,133,500	-		LU632_RS16540	0.35	-1.1
3,133,648	+				+0.8
3,133,648	+				+0.2
3,133,928	+		LU632_RS16545	0.54	-0.5
3,134,035	+		LU632_RS16545	0.73	+1.8
3,134,035	+		LU632_RS16545	0.73	-2.2
3,134,035	+		LU632_RS16545	0.73	-3.1
3,134,035	+		LU632_RS16545	0.73	+0.8
3,134,036	-		LU632_RS16545	0.73	-1.0
3,134,323	-		LU632_RS16550	0.79	-3.4
3,134,326	-		LU632_RS16550	0.81	+1.2
3,134,461	+		LU632_RS16555	0.22	-3.1
3,134,473	-		LU632_RS16555	0.28	-0.7
3,134,513	+		LU632_RS16555	0.48	+0.7