Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13740

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
2,624,688	+	putP	LU632_RS13735	0.65	-2.9
2,624,732	+	putP	LU632_RS13735	0.68	+0.4
2,624,793	-	putP	LU632_RS13735	0.72	-0.2
2,624,809	+	putP	LU632_RS13735	0.73	-1.4
2,624,844	+	putP	LU632_RS13735	0.75	-2.2
2,624,874	-	putP	LU632_RS13735	0.77	-0.2
2,624,993	-	putP	LU632_RS13735	0.85	-2.1
2,625,107	+				-0.4
2,625,108	-				-1.4
2,625,108	-				-2.9
2,625,142	-				-0.8
2,625,142	-				+1.6
2,625,154	+				+0.8
2,625,167	-				+0.3
2,625,168	+				-3.2
2,625,169	-				+0.7
2,625,169	-				-1.5
2,625,169	-				-0.9
2,625,170	+				-3.6
2,625,170	+				+0.9
2,625,170	+				+0.9
2,625,171	-				-0.6
2,625,323	+				-1.9
2,625,384	+				-1.7
2,625,385	-				-0.2
2,625,399	+				-0.9
2,625,430	-				-0.7
2,625,465	+				+2.0
2,625,512	-				-0.5
2,625,517	+				+0.6
2,625,582	+				-1.7
2,625,620	-				+0.8
2,625,673	+				-0.9
2,625,673	+				+1.0
2,625,674	-				-0.4
2,625,674	-				+2.6
2,626,138	+	putA	LU632_RS13740	0.13	+1.2
2,626,312	+	putA	LU632_RS13740	0.18	+1.0
2,626,312	+	putA	LU632_RS13740	0.18	-2.5
2,626,312	+	putA	LU632_RS13740	0.18	-1.8
2,626,458	-	putA	LU632_RS13740	0.21	+0.6
2,626,458	-	putA	LU632_RS13740	0.21	+0.9
2,626,459	-	putA	LU632_RS13740	0.21	-0.7
2,626,461	+	putA	LU632_RS13740	0.21	-0.9
2,626,463	-	putA	LU632_RS13740	0.21	-0.2
2,626,517	+	putA	LU632_RS13740	0.23	-0.2
2,626,518	-	putA	LU632_RS13740	0.23	-0.9
2,626,642	-	putA	LU632_RS13740	0.26	-0.1
2,626,666	+	putA	LU632_RS13740	0.27	-0.3
2,626,666	+	putA	LU632_RS13740	0.27	-2.9
2,626,667	-	putA	LU632_RS13740	0.27	-0.8
2,626,711	+	putA	LU632_RS13740	0.28	-0.9
2,626,711	+	putA	LU632_RS13740	0.28	-1.9
2,626,712	-	putA	LU632_RS13740	0.28	-1.9
2,626,934	-	putA	LU632_RS13740	0.33	-0.0
2,626,981	+	putA	LU632_RS13740	0.34	+0.5
2,627,093	+	putA	LU632_RS13740	0.37	-0.9
2,627,093	+	putA	LU632_RS13740	0.37	-0.6
2,627,094	-	putA	LU632_RS13740	0.37	-3.1
2,627,111	-	putA	LU632_RS13740	0.38	-2.8
2,627,114	+	putA	LU632_RS13740	0.38	+1.2
2,627,115	-	putA	LU632_RS13740	0.38	+2.6
2,627,115	-	putA	LU632_RS13740	0.38	-0.9
2,627,128	+	putA	LU632_RS13740	0.38	+1.2
2,627,129	+	putA	LU632_RS13740	0.38	+3.4
2,627,130	-	putA	LU632_RS13740	0.38	-1.6
2,627,169	-	putA	LU632_RS13740	0.39	+0.6
2,627,206	+	putA	LU632_RS13740	0.40	-0.7
2,627,225	+	putA	LU632_RS13740	0.41	-0.4
2,627,225	+	putA	LU632_RS13740	0.41	-0.2
2,627,225	+	putA	LU632_RS13740	0.41	+1.0
2,627,225	+	putA	LU632_RS13740	0.41	+0.6
2,627,225	+	putA	LU632_RS13740	0.41	-2.2
2,627,226	-	putA	LU632_RS13740	0.41	+0.6
2,627,226	-	putA	LU632_RS13740	0.41	-1.7
2,627,226	-	putA	LU632_RS13740	0.41	+3.0
2,627,226	-	putA	LU632_RS13740	0.41	-0.4
2,627,261	+	putA	LU632_RS13740	0.42	-0.9
2,627,262	-	putA	LU632_RS13740	0.42	+1.4
2,627,315	-	putA	LU632_RS13740	0.43	+0.7
2,627,441	+	putA	LU632_RS13740	0.46	-0.8
2,627,442	-	putA	LU632_RS13740	0.46	-1.1
2,627,731	+	putA	LU632_RS13740	0.54	-1.4
2,627,769	+	putA	LU632_RS13740	0.54	-0.4
2,627,787	+	putA	LU632_RS13740	0.55	-2.2
2,627,787	+	putA	LU632_RS13740	0.55	-1.1
2,627,862	-	putA	LU632_RS13740	0.57	+0.1
2,627,862	-	putA	LU632_RS13740	0.57	+1.0
2,627,865	-	putA	LU632_RS13740	0.57	-1.2
2,627,929	+	putA	LU632_RS13740	0.59	-0.5
2,627,930	-	putA	LU632_RS13740	0.59	-0.3
2,628,057	+	putA	LU632_RS13740	0.62	-0.4
2,628,320	-	putA	LU632_RS13740	0.68	+0.6
2,628,320	-	putA	LU632_RS13740	0.68	+0.0
2,628,509	-	putA	LU632_RS13740	0.73	+6.2
2,628,529	-	putA	LU632_RS13740	0.74	-1.9
2,628,532	-	putA	LU632_RS13740	0.74	-1.7
2,628,555	-	putA	LU632_RS13740	0.74	+0.2
2,628,624	+	putA	LU632_RS13740	0.76	+1.7
2,628,731	-	putA	LU632_RS13740	0.79	+5.1
2,628,773	-	putA	LU632_RS13740	0.80	-1.3
2,628,796	-	putA	LU632_RS13740	0.81	-1.4
2,628,825	-	putA	LU632_RS13740	0.81	+2.8
2,628,825	-	putA	LU632_RS13740	0.81	+0.0
2,629,005	+	putA	LU632_RS13740	0.86	+0.4
2,629,005	+	putA	LU632_RS13740	0.86	-1.1
2,629,005	+	putA	LU632_RS13740	0.86	+1.6
2,629,006	-	putA	LU632_RS13740	0.86	+1.4
2,629,153	+	putA	LU632_RS13740	0.90	+0.6
2,629,160	+	putA	LU632_RS13740	0.90	-0.4
2,629,160	+	putA	LU632_RS13740	0.90	-0.6
2,629,161	-	putA	LU632_RS13740	0.90	+1.6
2,629,324	+				-1.0
2,629,324	+				+0.5
2,629,324	+				+0.5
2,629,324	+				+1.7
2,629,325	-				+1.2
2,629,325	-				+1.2
2,629,347	+				+3.0
2,629,348	-				+0.9
2,629,405	-				+1.5
2,629,405	-				-1.4
2,629,641	+				-0.9
2,629,641	+				+1.6
2,629,642	-				+1.8
2,629,643	+				+2.1
2,629,644	-				-0.6
2,629,644	-				-1.0
2,629,644	-				+1.1
2,629,696	+				-1.2
2,629,745	+				-1.1
2,629,746	-				+3.8
2,629,746	-				+0.4
2,629,746	-				-0.7
2,629,746	-				+0.8
2,629,750	-				-2.2
2,629,751	+				-0.9
2,629,752	-				+0.3
2,629,752	-				-0.8
2,629,767	-				-0.1
2,629,771	+				+1.4
2,629,771	+				+0.6
2,629,798	+				-0.4
2,629,799	-				+1.0
2,629,799	-				-0.5
2,629,799	-				-0.1
2,629,799	-				+2.6
2,629,799	-				-2.3
2,629,800	+				-0.4
2,629,800	+				-0.5
2,629,801	-				+1.5
2,629,851	-				-0.9
2,629,899	+				+0.6
2,629,899	+				-2.5
2,629,899	+				-1.7
2,629,900	-				+1.2
2,629,935	+				+1.5
2,629,962	+				+0.2
2,630,131	+				-0.4
2,630,131	+				-1.8
2,630,132	-				-0.4
2,630,132	-				+0.0
2,630,133	+				-2.5
2,630,133	+				-1.4
2,630,278	+				-1.4
2,630,279	-				+0.5
2,630,279	-				-0.1
2,630,279	-				-1.3
2,630,298	+				-0.2
2,630,303	+				+1.5
2,630,304	-				+0.9
2,630,304	-				-0.9
2,630,429	+		LU632_RS13745	0.11	-0.9
2,630,429	+		LU632_RS13745	0.11	-0.6
2,630,429	+		LU632_RS13745	0.11	+0.5
2,630,429	+		LU632_RS13745	0.11	-0.5
2,630,429	+		LU632_RS13745	0.11	+2.1
2,630,430	-		LU632_RS13745	0.11	-4.5
2,630,430	-		LU632_RS13745	0.11	+0.7
2,630,430	-		LU632_RS13745	0.11	+0.6
2,630,430	-		LU632_RS13745	0.11	+0.3
2,630,430	-		LU632_RS13745	0.11	-2.4
2,630,434	+		LU632_RS13745	0.11	-0.9
2,630,434	+		LU632_RS13745	0.11	-0.6
2,630,434	+		LU632_RS13745	0.11	-1.1
2,630,435	-		LU632_RS13745	0.11	-2.4
2,630,464	-		LU632_RS13745	0.11	-1.7
2,630,465	+		LU632_RS13745	0.11	-0.1
2,630,465	+		LU632_RS13745	0.11	-3.1
2,630,466	-		LU632_RS13745	0.11	-2.4
2,630,466	-		LU632_RS13745	0.11	-1.3
2,630,480	+		LU632_RS13745	0.11	-0.4
2,630,481	-		LU632_RS13745	0.12	-2.5
2,630,501	+		LU632_RS13745	0.12	-0.4
2,630,502	-		LU632_RS13745	0.12	+1.7
2,630,502	-		LU632_RS13745	0.12	-3.7
2,630,502	-		LU632_RS13745	0.12	+0.4
2,630,504	+		LU632_RS13745	0.12	+1.4
2,630,505	-		LU632_RS13745	0.12	-0.9