Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09080

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
1,707,899	+				-0.8
1,708,028	+		LU632_RS09080	0.18	+0.7
1,708,028	-		LU632_RS09080	0.18	+0.5
1,708,029	-		LU632_RS09080	0.18	-0.2
1,708,032	+		LU632_RS09080	0.18	-1.5
1,708,177	+		LU632_RS09080	0.36	+0.3
1,708,177	+		LU632_RS09080	0.36	-0.1
1,708,177	+		LU632_RS09080	0.36	+2.8
1,708,177	+		LU632_RS09080	0.36	-2.9
1,708,178	-		LU632_RS09080	0.36	+3.2
1,708,178	-		LU632_RS09080	0.36	-2.6
1,708,178	-		LU632_RS09080	0.36	-0.6
1,708,242	+		LU632_RS09080	0.44	-2.0
1,708,242	+		LU632_RS09080	0.44	+1.1
1,708,329	+		LU632_RS09080	0.54	+1.2
1,708,383	-		LU632_RS09080	0.61	+0.8
1,708,383	-		LU632_RS09080	0.61	+1.9
1,708,582	-		LU632_RS09080	0.85	-1.0
1,708,582	-		LU632_RS09080	0.85	+1.5
1,708,741	+				-4.1
1,708,742	-				-1.9
1,708,827	+				-0.5
1,708,864	+				+0.9
1,708,909	-				-0.2
1,708,999	+	pgl	LU632_RS09085	0.15	-1.8
1,709,035	+	pgl	LU632_RS09085	0.19	-0.8
1,709,036	-	pgl	LU632_RS09085	0.19	+0.8
1,709,038	-	pgl	LU632_RS09085	0.19	-0.0
1,709,103	+	pgl	LU632_RS09085	0.26	-2.4
1,709,420	-	pgl	LU632_RS09085	0.57	+0.2
1,709,420	-	pgl	LU632_RS09085	0.57	-0.2