Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08240

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
1,549,500	+				-1.4
1,549,504	+				-0.6
1,549,504	+				+0.1
1,549,518	-				-0.1
1,549,610	-		LU632_RS08230	0.36	+0.9
1,549,610	-		LU632_RS08230	0.36	+0.5
1,549,612	-		LU632_RS08230	0.37	-2.6
1,549,634	+		LU632_RS08230	0.44	+0.4
1,549,720	+		LU632_RS08230	0.70	+1.6
1,549,829	-				-0.2
1,549,848	-				+1.4
1,549,967	-				+1.3
1,550,353	+				-1.0
1,550,354	-				-0.9
1,550,354	-				+0.4
1,550,354	-				+0.6
1,550,425	+				-0.5
1,550,566	+		LU632_RS08240	0.44	+0.1
1,550,571	+		LU632_RS08240	0.47	+2.1
1,550,571	+		LU632_RS08240	0.47	+2.0
1,550,572	-		LU632_RS08240	0.48	-1.5
1,550,615	-		LU632_RS08240	0.73	+1.0
1,550,669	+				+1.0
1,550,670	-				-3.0
1,550,729	-				-0.8
1,550,771	-				+3.1
1,550,862	+		LU632_RS08245	0.29	+0.6
1,550,863	-		LU632_RS08245	0.29	+0.6
1,550,897	+		LU632_RS08245	0.43	-2.1
1,550,931	-		LU632_RS08245	0.56	+0.8
1,550,933	+		LU632_RS08245	0.57	-2.5
1,550,934	-		LU632_RS08245	0.57	+0.9
1,550,958	+		LU632_RS08245	0.67	-2.3
1,551,085	-	tehB	LU632_RS08250	0.15	-1.1
1,551,094	-	tehB	LU632_RS08250	0.17	+0.4
1,551,122	+	tehB	LU632_RS08250	0.21	-2.8
1,551,150	+	tehB	LU632_RS08250	0.26	-0.4
1,551,212	+	tehB	LU632_RS08250	0.36	+1.0
1,551,312	-	tehB	LU632_RS08250	0.53	+0.4
1,551,418	-	tehB	LU632_RS08250	0.70	+0.5
1,551,459	-	tehB	LU632_RS08250	0.77	-1.4
1,551,511	+	tehB	LU632_RS08250	0.86	+0.9