Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt truA and LU632_RS07830 are separated by 29 nucleotides LU632_RS07830 and LU632_RS07835 are separated by 284 nucleotides LU632_RS07835 and LU632_RS07840 are separated by 359 nucleotides
LU632_RS07825: truA - tRNA pseudouridine(38-40) synthase TruA, at 1,460,824 to 1,461,639
truA
LU632_RS07830: LU632_RS07830 - DedA family protein, at 1,461,669 to 1,462,328
_RS07830
LU632_RS07835: LU632_RS07835 - chorismate mutase, at 1,462,613 to 1,463,155
_RS07835
LU632_RS07840: LU632_RS07840 - hypothetical protein, at 1,463,515 to 1,464,939
_RS07840
Position (kb) 1462
1463
1464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1461.637 kb on + strand at 1461.637 kb on + strand at 1461.653 kb on + strand at 1461.653 kb on + strand at 1461.668 kb on + strand at 1461.669 kb on - strand at 1461.741 kb on + strand, within LU632_RS07830 at 1461.757 kb on - strand, within LU632_RS07830 at 1461.764 kb on - strand, within LU632_RS07830 at 1461.797 kb on - strand, within LU632_RS07830 at 1461.936 kb on + strand, within LU632_RS07830 at 1461.936 kb on + strand, within LU632_RS07830 at 1462.006 kb on - strand, within LU632_RS07830 at 1462.118 kb on + strand, within LU632_RS07830 at 1462.118 kb on + strand, within LU632_RS07830 at 1462.118 kb on + strand, within LU632_RS07830 at 1462.118 kb on + strand, within LU632_RS07830 at 1462.119 kb on - strand, within LU632_RS07830 at 1462.119 kb on - strand, within LU632_RS07830 at 1462.143 kb on + strand, within LU632_RS07830 at 1462.144 kb on - strand, within LU632_RS07830 at 1462.146 kb on - strand, within LU632_RS07830 at 1462.152 kb on - strand, within LU632_RS07830 at 1462.185 kb on + strand, within LU632_RS07830 at 1462.194 kb on + strand, within LU632_RS07830 at 1462.230 kb on - strand, within LU632_RS07830 at 1462.359 kb on + strand at 1462.360 kb on - strand at 1462.430 kb on + strand at 1462.445 kb on + strand at 1462.610 kb on - strand at 1462.610 kb on - strand at 1462.615 kb on - strand at 1462.622 kb on - strand at 1462.628 kb on - strand at 1462.897 kb on + strand, within LU632_RS07835 at 1462.898 kb on - strand, within LU632_RS07835 at 1463.034 kb on + strand, within LU632_RS07835 at 1463.035 kb on - strand, within LU632_RS07835 at 1463.171 kb on - strand at 1463.208 kb on - strand at 1463.247 kb on + strand at 1463.248 kb on - strand at 1463.314 kb on + strand at 1463.455 kb on + strand at 1464.034 kb on - strand, within LU632_RS07840 at 1464.125 kb on + strand, within LU632_RS07840 at 1464.125 kb on + strand, within LU632_RS07840
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1) remove 1,461,637 + +1.0 1,461,637 + -0.4 1,461,653 + -0.3 1,461,653 + -2.3 1,461,668 + -1.7 1,461,669 - +2.2 1,461,741 + LU632_RS07830 0.11 -0.1 1,461,757 - LU632_RS07830 0.13 +0.6 1,461,764 - LU632_RS07830 0.14 -1.7 1,461,797 - LU632_RS07830 0.19 -0.2 1,461,936 + LU632_RS07830 0.40 +1.4 1,461,936 + LU632_RS07830 0.40 +0.3 1,462,006 - LU632_RS07830 0.51 -1.1 1,462,118 + LU632_RS07830 0.68 +2.5 1,462,118 + LU632_RS07830 0.68 +0.5 1,462,118 + LU632_RS07830 0.68 +0.9 1,462,118 + LU632_RS07830 0.68 -0.8 1,462,119 - LU632_RS07830 0.68 +1.6 1,462,119 - LU632_RS07830 0.68 +1.9 1,462,143 + LU632_RS07830 0.72 +0.2 1,462,144 - LU632_RS07830 0.72 -1.0 1,462,146 - LU632_RS07830 0.72 -2.3 1,462,152 - LU632_RS07830 0.73 -0.6 1,462,185 + LU632_RS07830 0.78 +2.6 1,462,194 + LU632_RS07830 0.80 -1.4 1,462,230 - LU632_RS07830 0.85 -1.4 1,462,359 + -2.1 1,462,360 - +1.6 1,462,430 + +1.2 1,462,445 + +4.9 1,462,610 - -0.8 1,462,610 - -0.0 1,462,615 - +2.8 1,462,622 - -2.3 1,462,628 - +0.6 1,462,897 + LU632_RS07835 0.52 +0.9 1,462,898 - LU632_RS07835 0.52 -2.1 1,463,034 + LU632_RS07835 0.78 -0.9 1,463,035 - LU632_RS07835 0.78 -1.1 1,463,171 - -0.0 1,463,208 - +0.3 1,463,247 + +1.9 1,463,248 - -2.9 1,463,314 + -0.8 1,463,455 + +1.4 1,464,034 - LU632_RS07840 0.36 +0.9 1,464,125 + LU632_RS07840 0.43 -0.7 1,464,125 + LU632_RS07840 0.43 +0.4
Or see this region's nucleotide sequence