Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06210

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
1,188,543	+		LU632_RS06200	0.73	-1.0
1,188,544	-		LU632_RS06200	0.73	+0.5
1,188,560	+		LU632_RS06200	0.77	+1.5
1,188,560	+		LU632_RS06200	0.77	-0.7
1,188,581	-		LU632_RS06200	0.82	+2.3
1,188,649	-				-0.6
1,188,649	-				+1.3
1,188,683	+				-0.3
1,188,921	+		LU632_RS06205	0.37	-2.0
1,188,921	+		LU632_RS06205	0.37	-0.6
1,188,922	-		LU632_RS06205	0.38	+1.0
1,189,029	-		LU632_RS06205	0.53	-1.6
1,189,115	+		LU632_RS06205	0.65	-0.0
1,189,116	-		LU632_RS06205	0.65	-1.6
1,189,142	+		LU632_RS06205	0.69	-1.9
1,189,180	+		LU632_RS06205	0.74	+4.7
1,189,181	-		LU632_RS06205	0.74	-0.9
1,189,185	+		LU632_RS06205	0.75	-1.0
1,189,185	+		LU632_RS06205	0.75	-0.6
1,189,186	-		LU632_RS06205	0.75	+0.7
1,189,186	-		LU632_RS06205	0.75	+1.2
1,189,186	-		LU632_RS06205	0.75	+0.3
1,189,288	-		LU632_RS06205	0.90	-0.0
1,189,479	-				-1.4
1,189,507	+				+2.1
1,189,507	+				+1.1
1,189,508	-				+0.1
1,189,510	+				-0.6
1,189,581	+				-0.1
1,189,588	-				-2.5
1,189,611	-				-3.0
1,189,633	+				-0.6
1,189,855	+	argA	LU632_RS06210	0.24	-1.6
1,189,858	+	argA	LU632_RS06210	0.25	-1.4
1,189,859	-	argA	LU632_RS06210	0.25	-0.0
1,189,859	-	argA	LU632_RS06210	0.25	-2.5
1,189,861	+	argA	LU632_RS06210	0.25	-1.4
1,190,068	+	argA	LU632_RS06210	0.40	-3.5
1,190,145	+	argA	LU632_RS06210	0.46	-1.2
1,190,145	+	argA	LU632_RS06210	0.46	-1.6
1,190,171	+	argA	LU632_RS06210	0.48	-2.0
1,190,172	-	argA	LU632_RS06210	0.48	-3.7
1,190,199	-	argA	LU632_RS06210	0.50	+1.0
1,190,199	-	argA	LU632_RS06210	0.50	-1.4
1,190,256	-	argA	LU632_RS06210	0.54	-2.0
1,190,450	+	argA	LU632_RS06210	0.69	-1.6
1,190,451	-	argA	LU632_RS06210	0.69	-2.8
1,190,495	-	argA	LU632_RS06210	0.72	+2.5
1,190,495	-	argA	LU632_RS06210	0.72	-0.0
1,190,518	+	argA	LU632_RS06210	0.74	-2.5
1,190,519	-	argA	LU632_RS06210	0.74	-0.0
1,190,551	+	argA	LU632_RS06210	0.76	-1.5
1,190,685	+	argA	LU632_RS06210	0.86	-1.6
1,190,686	-	argA	LU632_RS06210	0.86	-1.6
1,190,686	-	argA	LU632_RS06210	0.86	+2.3
1,190,694	-	argA	LU632_RS06210	0.87	-1.0
1,190,728	+	argA	LU632_RS06210	0.89	-1.0
1,190,818	-				-2.4
1,190,872	+				-2.5
1,190,873	-				-4.7
1,190,873	-				-1.4
1,190,964	+				-0.8
1,190,964	+				+0.2
1,190,965	-				-2.2
1,190,965	-				-0.9
1,190,967	-				-1.4
1,191,093	+				+1.6
1,191,104	+				-0.3
1,191,528	+	amiC	LU632_RS06215	0.35	-2.1
1,191,528	+	amiC	LU632_RS06215	0.35	-1.0
1,191,528	+	amiC	LU632_RS06215	0.35	-2.5
1,191,528	+	amiC	LU632_RS06215	0.35	+1.4
1,191,529	-	amiC	LU632_RS06215	0.35	-1.3
1,191,529	-	amiC	LU632_RS06215	0.35	-0.1
1,191,529	-	amiC	LU632_RS06215	0.35	+1.4
1,191,529	-	amiC	LU632_RS06215	0.35	-1.6
1,191,529	-	amiC	LU632_RS06215	0.35	-1.5
1,191,580	+	amiC	LU632_RS06215	0.40	-0.9
1,191,581	-	amiC	LU632_RS06215	0.40	-0.3
1,191,582	+	amiC	LU632_RS06215	0.40	-0.8
1,191,583	-	amiC	LU632_RS06215	0.40	-1.3
1,191,583	-	amiC	LU632_RS06215	0.40	+2.2
1,191,583	-	amiC	LU632_RS06215	0.40	-0.8
1,191,583	-	amiC	LU632_RS06215	0.40	+0.0
1,191,714	+	amiC	LU632_RS06215	0.50	+1.3
1,191,715	-	amiC	LU632_RS06215	0.50	-1.0
1,191,715	-	amiC	LU632_RS06215	0.50	-1.0
1,191,715	-	amiC	LU632_RS06215	0.50	-0.4
1,191,715	-	amiC	LU632_RS06215	0.50	+0.5
1,191,819	-	amiC	LU632_RS06215	0.59	-0.4
1,191,819	-	amiC	LU632_RS06215	0.59	-0.6
1,191,819	-	amiC	LU632_RS06215	0.59	+0.7