Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05835

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
1,107,821	-				+0.1
1,107,873	+		LU632_RS05835	0.23	+1.2
1,108,039	+		LU632_RS05835	0.66	+1.1
1,108,040	-		LU632_RS05835	0.66	+2.1
1,108,048	+		LU632_RS05835	0.68	-0.9
1,108,066	+		LU632_RS05835	0.73	+0.3
1,108,155	+				+1.0
1,108,158	+				-0.1
1,108,167	-				+0.8
1,108,235	-				+2.0
1,108,254	+				-1.6
1,108,279	+				-2.0
1,108,279	+				+1.7
1,108,291	-				-1.4
1,108,291	-				-3.0
1,108,327	+				+0.3
1,108,407	+				-2.2
1,108,408	-				-1.0
1,108,408	-				-3.2
1,108,453	-				-0.9
1,108,581	-		LU632_RS05840	0.13	-3.5
1,108,672	-		LU632_RS05840	0.26	+1.0
1,108,797	+		LU632_RS05840	0.43	+0.1
1,108,842	+		LU632_RS05840	0.49	-2.8
1,108,842	+		LU632_RS05840	0.49	-0.4
1,108,953	+		LU632_RS05840	0.65	+1.3
1,108,986	+		LU632_RS05840	0.69	-2.1
1,108,987	-		LU632_RS05840	0.69	-0.2
1,109,069	-		LU632_RS05840	0.81	-2.0
1,109,095	+		LU632_RS05840	0.84	+2.3
1,109,095	+		LU632_RS05840	0.84	+0.7
1,109,140	+				+1.0