Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04255

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyiaK and LU632_RS04255 are separated by 13 nucleotidesLU632_RS04255 and LU632_RS04260 are separated by 14 nucleotides LU632_RS04250: yiaK - 3-dehydro-L-gulonate 2-dehydrogenase, at 845,408 to 846,406 yiaK LU632_RS04255: LU632_RS04255 - YhcH/YjgK/YiaL family protein, at 846,420 to 846,887 _RS04255 LU632_RS04260: LU632_RS04260 - MFS transporter, at 846,902 to 848,200 _RS04260 Position (kb) 846 847Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 845.454 kb on + strandat 845.563 kb on + strand, within yiaKat 845.564 kb on - strand, within yiaKat 845.699 kb on - strand, within yiaKat 845.923 kb on + strand, within yiaKat 846.021 kb on - strand, within yiaKat 846.097 kb on + strand, within yiaKat 846.130 kb on + strand, within yiaKat 846.434 kb on + strandat 846.489 kb on + strand, within LU632_RS04255at 846.490 kb on - strand, within LU632_RS04255at 846.636 kb on + strand, within LU632_RS04255at 846.636 kb on + strand, within LU632_RS04255at 846.821 kb on + strand, within LU632_RS04255at 846.821 kb on + strand, within LU632_RS04255at 846.901 kb on + strandat 846.901 kb on + strandat 846.902 kb on - strandat 846.913 kb on - strandat 846.985 kb on + strandat 846.995 kb on - strandat 847.002 kb on - strandat 847.578 kb on + strand, within LU632_RS04260at 847.579 kb on - strand, within LU632_RS04260at 847.646 kb on - strand, within LU632_RS04260at 847.664 kb on + strand, within LU632_RS04260at 847.688 kb on - strand, within LU632_RS04260

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
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845,454 + -2.0
845,563 + yiaK LU632_RS04250 0.16 -1.4
845,564 - yiaK LU632_RS04250 0.16 +0.2
845,699 - yiaK LU632_RS04250 0.29 -3.2
845,923 + yiaK LU632_RS04250 0.52 -2.3
846,021 - yiaK LU632_RS04250 0.61 -2.4
846,097 + yiaK LU632_RS04250 0.69 -2.6
846,130 + yiaK LU632_RS04250 0.72 -2.5
846,434 + -2.8
846,489 + LU632_RS04255 0.15 -0.6
846,490 - LU632_RS04255 0.15 -2.3
846,636 + LU632_RS04255 0.46 -2.4
846,636 + LU632_RS04255 0.46 -1.0
846,821 + LU632_RS04255 0.86 -0.0
846,821 + LU632_RS04255 0.86 -0.0
846,901 + -0.0
846,901 + -1.2
846,902 - -4.9
846,913 - -0.2
846,985 + -0.6
846,995 - -1.2
847,002 - -2.3
847,578 + LU632_RS04260 0.52 -2.7
847,579 - LU632_RS04260 0.52 -2.7
847,646 - LU632_RS04260 0.57 -2.6
847,664 + LU632_RS04260 0.59 +3.0
847,688 - LU632_RS04260 0.61 -0.6

Or see this region's nucleotide sequence