Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03550

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03540 and LU632_RS03545 are separated by 265 nucleotidesLU632_RS03545 and LU632_RS03550 are separated by 20 nucleotidesLU632_RS03550 and LU632_RS03555 overlap by 4 nucleotidesLU632_RS03555 and LU632_RS03560 overlap by 1 nucleotides LU632_RS03540: LU632_RS03540 - hypothetical protein, at 716,859 to 717,590 _RS03540 LU632_RS03545: LU632_RS03545 - hypothetical protein, at 717,856 to 718,056 _RS03545 LU632_RS03550: LU632_RS03550 - phage portal protein, at 718,077 to 719,099 _RS03550 LU632_RS03555: LU632_RS03555 - terminase family protein, at 719,096 to 719,842 _RS03555 LU632_RS03560: LU632_RS03560 - terminase ATPase subunit family protein, at 719,842 to 721,611 _RS03560 Position (kb) 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 717.105 kb on - strand, within LU632_RS03540at 717.165 kb on + strand, within LU632_RS03540at 717.166 kb on - strand, within LU632_RS03540at 717.211 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.228 kb on + strand, within LU632_RS03540at 717.248 kb on + strand, within LU632_RS03540at 717.318 kb on - strand, within LU632_RS03540at 717.336 kb on - strand, within LU632_RS03540at 717.341 kb on + strand, within LU632_RS03540at 717.342 kb on - strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.425 kb on + strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.452 kb on + strand, within LU632_RS03540at 717.588 kb on + strandat 717.588 kb on + strandat 717.589 kb on - strandat 717.705 kb on - strandat 717.716 kb on + strandat 717.716 kb on + strandat 717.717 kb on - strandat 717.858 kb on - strandat 717.871 kb on - strandat 717.920 kb on + strand, within LU632_RS03545at 717.963 kb on - strand, within LU632_RS03545at 718.079 kb on - strandat 718.099 kb on + strandat 718.227 kb on - strand, within LU632_RS03550at 718.239 kb on - strand, within LU632_RS03550at 718.247 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.421 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.514 kb on - strand, within LU632_RS03550at 718.516 kb on + strand, within LU632_RS03550at 718.562 kb on + strand, within LU632_RS03550at 718.577 kb on - strand, within LU632_RS03550at 718.591 kb on + strand, within LU632_RS03550at 718.592 kb on - strand, within LU632_RS03550at 718.604 kb on + strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.711 kb on + strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.740 kb on + strand, within LU632_RS03550at 718.789 kb on - strand, within LU632_RS03550at 718.849 kb on + strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550at 719.270 kb on + strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.347 kb on - strand, within LU632_RS03555at 719.351 kb on - strand, within LU632_RS03555at 719.351 kb on - strand, within LU632_RS03555at 719.461 kb on - strand, within LU632_RS03555at 719.592 kb on + strand, within LU632_RS03555at 719.593 kb on - strand, within LU632_RS03555at 719.860 kb on - strandat 719.969 kb on + strandat 719.969 kb on + strandat 719.970 kb on - strandat 719.970 kb on - strandat 720.051 kb on - strand, within LU632_RS03560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
remove
717,105 - LU632_RS03540 0.34 -2.7
717,165 + LU632_RS03540 0.42 +1.0
717,166 - LU632_RS03540 0.42 +2.1
717,211 - LU632_RS03540 0.48 +2.4
717,219 - LU632_RS03540 0.49 -1.8
717,219 - LU632_RS03540 0.49 -1.2
717,228 + LU632_RS03540 0.50 -0.5
717,248 + LU632_RS03540 0.53 -1.7
717,318 - LU632_RS03540 0.63 -1.4
717,336 - LU632_RS03540 0.65 +0.4
717,341 + LU632_RS03540 0.66 -0.8
717,342 - LU632_RS03540 0.66 -1.3
717,423 + LU632_RS03540 0.77 -1.8
717,423 + LU632_RS03540 0.77 +0.4
717,425 + LU632_RS03540 0.77 -1.8
717,426 - LU632_RS03540 0.77 -0.8
717,426 - LU632_RS03540 0.77 +2.0
717,426 - LU632_RS03540 0.77 +0.2
717,452 + LU632_RS03540 0.81 -1.1
717,588 + -0.7
717,588 + +1.5
717,589 - +1.1
717,705 - +3.1
717,716 + +0.7
717,716 + -0.3
717,717 - -0.4
717,858 - +0.8
717,871 - -2.7
717,920 + LU632_RS03545 0.32 -0.9
717,963 - LU632_RS03545 0.53 +0.2
718,079 - -1.0
718,099 + -1.0
718,227 - LU632_RS03550 0.15 +1.5
718,239 - LU632_RS03550 0.16 +1.2
718,247 + LU632_RS03550 0.17 -1.8
718,302 + LU632_RS03550 0.22 -1.0
718,302 + LU632_RS03550 0.22 +1.2
718,421 + LU632_RS03550 0.34 +1.6
718,480 + LU632_RS03550 0.39 -0.6
718,480 + LU632_RS03550 0.39 -1.3
718,480 + LU632_RS03550 0.39 +4.4
718,480 + LU632_RS03550 0.39 +2.3
718,481 - LU632_RS03550 0.39 +0.7
718,481 - LU632_RS03550 0.39 -1.8
718,481 - LU632_RS03550 0.39 -1.3
718,514 - LU632_RS03550 0.43 +2.0
718,516 + LU632_RS03550 0.43 +0.0
718,562 + LU632_RS03550 0.47 +1.0
718,577 - LU632_RS03550 0.49 +2.3
718,591 + LU632_RS03550 0.50 +1.0
718,592 - LU632_RS03550 0.50 -1.1
718,604 + LU632_RS03550 0.52 -2.7
718,605 - LU632_RS03550 0.52 -0.4
718,605 - LU632_RS03550 0.52 +0.6
718,605 - LU632_RS03550 0.52 -1.5
718,711 + LU632_RS03550 0.62 -1.0
718,712 - LU632_RS03550 0.62 +0.5
718,712 - LU632_RS03550 0.62 +0.9
718,740 + LU632_RS03550 0.65 -0.5
718,789 - LU632_RS03550 0.70 -0.5
718,849 + LU632_RS03550 0.75 +1.0
718,850 - LU632_RS03550 0.76 +2.0
718,850 - LU632_RS03550 0.76 -0.2
718,899 + LU632_RS03550 0.80 -0.4
718,899 + LU632_RS03550 0.80 +0.2
719,270 + LU632_RS03555 0.23 -0.6
719,347 - LU632_RS03555 0.34 +2.4
719,347 - LU632_RS03555 0.34 +0.0
719,347 - LU632_RS03555 0.34 -1.3
719,351 - LU632_RS03555 0.34 +0.0
719,351 - LU632_RS03555 0.34 -1.3
719,461 - LU632_RS03555 0.49 -2.4
719,592 + LU632_RS03555 0.66 -2.0
719,593 - LU632_RS03555 0.67 +0.8
719,860 - -2.5
719,969 + +0.8
719,969 + +0.9
719,970 - -2.7
719,970 - +1.2
720,051 - LU632_RS03560 0.12 -0.3

Or see this region's nucleotide sequence