Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03300

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03295 and LU632_RS03300 are separated by 160 nucleotidesLU632_RS03300 and LU632_RS03305 are separated by 65 nucleotides LU632_RS03295: LU632_RS03295 - aminoimidazole riboside kinase, at 674,885 to 675,802 _RS03295 LU632_RS03300: LU632_RS03300 - carbohydrate porin, at 675,963 to 677,525 _RS03300 LU632_RS03305: LU632_RS03305 - sucrose-specific PTS transporter subunit IIBC, at 677,591 to 678,961 _RS03305 Position (kb) 675 676 677 678Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 675.026 kb on - strand, within LU632_RS03295at 675.061 kb on + strand, within LU632_RS03295at 675.090 kb on + strand, within LU632_RS03295at 675.090 kb on + strand, within LU632_RS03295at 675.090 kb on + strand, within LU632_RS03295at 675.091 kb on - strand, within LU632_RS03295at 675.095 kb on - strand, within LU632_RS03295at 675.095 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.175 kb on + strand, within LU632_RS03295at 675.175 kb on + strand, within LU632_RS03295at 675.208 kb on + strand, within LU632_RS03295at 675.236 kb on - strand, within LU632_RS03295at 675.463 kb on + strand, within LU632_RS03295at 675.464 kb on - strand, within LU632_RS03295at 675.584 kb on + strand, within LU632_RS03295at 675.584 kb on + strand, within LU632_RS03295at 675.585 kb on - strand, within LU632_RS03295at 675.585 kb on - strand, within LU632_RS03295at 675.833 kb on - strandat 675.883 kb on - strandat 676.006 kb on + strandat 676.049 kb on + strandat 676.049 kb on + strandat 676.425 kb on + strand, within LU632_RS03300at 676.426 kb on - strand, within LU632_RS03300at 676.426 kb on - strand, within LU632_RS03300at 676.512 kb on - strand, within LU632_RS03300at 676.516 kb on - strand, within LU632_RS03300at 676.516 kb on - strand, within LU632_RS03300at 676.710 kb on + strand, within LU632_RS03300at 676.711 kb on - strand, within LU632_RS03300at 676.755 kb on + strand, within LU632_RS03300at 676.756 kb on - strand, within LU632_RS03300at 676.764 kb on - strand, within LU632_RS03300at 676.806 kb on + strand, within LU632_RS03300at 676.806 kb on + strand, within LU632_RS03300at 676.806 kb on + strand, within LU632_RS03300at 676.807 kb on + strand, within LU632_RS03300at 676.807 kb on - strand, within LU632_RS03300at 676.807 kb on - strand, within LU632_RS03300at 676.807 kb on - strand, within LU632_RS03300at 676.807 kb on - strand, within LU632_RS03300at 676.847 kb on + strand, within LU632_RS03300at 676.848 kb on - strand, within LU632_RS03300at 676.910 kb on + strand, within LU632_RS03300at 676.910 kb on + strand, within LU632_RS03300at 676.971 kb on + strand, within LU632_RS03300at 676.971 kb on + strand, within LU632_RS03300at 676.972 kb on - strand, within LU632_RS03300at 677.097 kb on + strand, within LU632_RS03300at 677.143 kb on + strand, within LU632_RS03300at 677.187 kb on + strand, within LU632_RS03300at 677.258 kb on + strand, within LU632_RS03300at 677.258 kb on + strand, within LU632_RS03300at 677.258 kb on + strand, within LU632_RS03300at 677.259 kb on - strand, within LU632_RS03300at 677.259 kb on - strand, within LU632_RS03300at 677.262 kb on + strand, within LU632_RS03300at 677.262 kb on + strand, within LU632_RS03300at 677.263 kb on - strand, within LU632_RS03300at 677.268 kb on + strand, within LU632_RS03300at 677.268 kb on + strand, within LU632_RS03300at 677.268 kb on + strand, within LU632_RS03300at 677.268 kb on + strand, within LU632_RS03300at 677.268 kb on + strand, within LU632_RS03300at 677.303 kb on + strand, within LU632_RS03300at 677.325 kb on + strand, within LU632_RS03300at 677.328 kb on - strand, within LU632_RS03300at 677.328 kb on - strand, within LU632_RS03300at 677.365 kb on + strand, within LU632_RS03300at 677.440 kb on - strandat 677.440 kb on - strandat 677.440 kb on - strandat 677.475 kb on - strandat 677.558 kb on + strandat 677.562 kb on + strandat 677.562 kb on + strandat 677.647 kb on + strandat 677.648 kb on - strandat 677.803 kb on + strand, within LU632_RS03305at 677.924 kb on - strand, within LU632_RS03305at 677.938 kb on + strand, within LU632_RS03305at 678.026 kb on + strand, within LU632_RS03305at 678.026 kb on + strand, within LU632_RS03305at 678.027 kb on - strand, within LU632_RS03305at 678.029 kb on - strand, within LU632_RS03305at 678.359 kb on - strand, within LU632_RS03305at 678.418 kb on + strand, within LU632_RS03305at 678.418 kb on + strand, within LU632_RS03305at 678.419 kb on - strand, within LU632_RS03305at 678.489 kb on - strand, within LU632_RS03305at 678.514 kb on - strand, within LU632_RS03305

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
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675,026 - LU632_RS03295 0.15 +1.7
675,061 + LU632_RS03295 0.19 +1.8
675,090 + LU632_RS03295 0.22 +3.6
675,090 + LU632_RS03295 0.22 +0.0
675,090 + LU632_RS03295 0.22 +0.7
675,091 - LU632_RS03295 0.22 +3.7
675,095 - LU632_RS03295 0.23 +2.0
675,095 - LU632_RS03295 0.23 +2.7
675,104 - LU632_RS03295 0.24 +1.7
675,104 - LU632_RS03295 0.24 +3.1
675,104 - LU632_RS03295 0.24 +2.1
675,104 - LU632_RS03295 0.24 +2.1
675,175 + LU632_RS03295 0.32 +4.1
675,175 + LU632_RS03295 0.32 +1.8
675,208 + LU632_RS03295 0.35 +1.1
675,236 - LU632_RS03295 0.38 +0.8
675,463 + LU632_RS03295 0.63 +4.6
675,464 - LU632_RS03295 0.63 +2.4
675,584 + LU632_RS03295 0.76 -2.0
675,584 + LU632_RS03295 0.76 +0.5
675,585 - LU632_RS03295 0.76 +3.5
675,585 - LU632_RS03295 0.76 +1.3
675,833 - -2.2
675,883 - -1.4
676,006 + -2.2
676,049 + -1.0
676,049 + -2.1
676,425 + LU632_RS03300 0.30 +1.0
676,426 - LU632_RS03300 0.30 -2.2
676,426 - LU632_RS03300 0.30 +1.0
676,512 - LU632_RS03300 0.35 -1.7
676,516 - LU632_RS03300 0.35 -1.8
676,516 - LU632_RS03300 0.35 -2.0
676,710 + LU632_RS03300 0.48 -2.0
676,711 - LU632_RS03300 0.48 +0.0
676,755 + LU632_RS03300 0.51 -2.8
676,756 - LU632_RS03300 0.51 -2.2
676,764 - LU632_RS03300 0.51 -1.9
676,806 + LU632_RS03300 0.54 -3.2
676,806 + LU632_RS03300 0.54 -0.6
676,806 + LU632_RS03300 0.54 +0.8
676,807 + LU632_RS03300 0.54 -1.9
676,807 - LU632_RS03300 0.54 -1.8
676,807 - LU632_RS03300 0.54 +0.2
676,807 - LU632_RS03300 0.54 -1.2
676,807 - LU632_RS03300 0.54 -1.3
676,847 + LU632_RS03300 0.57 -2.2
676,848 - LU632_RS03300 0.57 -1.9
676,910 + LU632_RS03300 0.61 -1.3
676,910 + LU632_RS03300 0.61 -1.7
676,971 + LU632_RS03300 0.64 -2.7
676,971 + LU632_RS03300 0.64 -0.3
676,972 - LU632_RS03300 0.65 -3.6
677,097 + LU632_RS03300 0.73 +0.0
677,143 + LU632_RS03300 0.75 -2.2
677,187 + LU632_RS03300 0.78 -2.7
677,258 + LU632_RS03300 0.83 -1.0
677,258 + LU632_RS03300 0.83 -2.1
677,258 + LU632_RS03300 0.83 -2.8
677,259 - LU632_RS03300 0.83 -4.0
677,259 - LU632_RS03300 0.83 +0.0
677,262 + LU632_RS03300 0.83 -3.7
677,262 + LU632_RS03300 0.83 -2.3
677,263 - LU632_RS03300 0.83 -2.2
677,268 + LU632_RS03300 0.83 -1.8
677,268 + LU632_RS03300 0.83 +1.0
677,268 + LU632_RS03300 0.83 -0.7
677,268 + LU632_RS03300 0.83 -3.9
677,268 + LU632_RS03300 0.83 -1.7
677,303 + LU632_RS03300 0.86 -4.3
677,325 + LU632_RS03300 0.87 -2.5
677,328 - LU632_RS03300 0.87 -3.9
677,328 - LU632_RS03300 0.87 -2.2
677,365 + LU632_RS03300 0.90 -1.8
677,440 - -4.5
677,440 - +1.0
677,440 - -1.6
677,475 - -4.7
677,558 + -3.0
677,562 + -1.6
677,562 + -1.9
677,647 + -1.0
677,648 - -3.2
677,803 + LU632_RS03305 0.15 -0.7
677,924 - LU632_RS03305 0.24 -1.3
677,938 + LU632_RS03305 0.25 -3.3
678,026 + LU632_RS03305 0.32 -1.3
678,026 + LU632_RS03305 0.32 +0.1
678,027 - LU632_RS03305 0.32 +0.5
678,029 - LU632_RS03305 0.32 -3.7
678,359 - LU632_RS03305 0.56 -1.8
678,418 + LU632_RS03305 0.60 -1.8
678,418 + LU632_RS03305 0.60 -2.0
678,419 - LU632_RS03305 0.60 -2.7
678,489 - LU632_RS03305 0.65 +1.8
678,514 - LU632_RS03305 0.67 -2.6

Or see this region's nucleotide sequence