Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02265

Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS02255 and LU632_RS02260 are separated by 83 nucleotidesLU632_RS02260 and LU632_RS02265 are separated by 123 nucleotidesLU632_RS02265 and LU632_RS02270 are separated by 812 nucleotides LU632_RS02255: LU632_RS02255 - UPF0149 family protein, at 446,109 to 446,684 _RS02255 LU632_RS02260: LU632_RS02260 - pirin family protein, at 446,768 to 447,472 _RS02260 LU632_RS02265: LU632_RS02265 - LysR family transcriptional regulator, at 447,596 to 448,498 _RS02265 LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604 _RS02270 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 446.712 kb on + strandat 446.712 kb on - strandat 446.740 kb on - strandat 446.799 kb on - strandat 446.842 kb on + strand, within LU632_RS02260at 446.864 kb on - strand, within LU632_RS02260at 446.864 kb on - strand, within LU632_RS02260at 446.864 kb on - strand, within LU632_RS02260at 446.891 kb on + strand, within LU632_RS02260at 446.891 kb on + strand, within LU632_RS02260at 446.922 kb on - strand, within LU632_RS02260at 446.922 kb on - strand, within LU632_RS02260at 446.925 kb on + strand, within LU632_RS02260at 446.926 kb on - strand, within LU632_RS02260at 446.950 kb on + strand, within LU632_RS02260at 446.972 kb on + strand, within LU632_RS02260at 447.011 kb on + strand, within LU632_RS02260at 447.011 kb on + strand, within LU632_RS02260at 447.011 kb on + strand, within LU632_RS02260at 447.122 kb on + strand, within LU632_RS02260at 447.176 kb on + strand, within LU632_RS02260at 447.297 kb on + strand, within LU632_RS02260at 447.343 kb on + strand, within LU632_RS02260at 447.363 kb on + strand, within LU632_RS02260at 447.387 kb on + strand, within LU632_RS02260at 447.506 kb on + strandat 447.507 kb on - strandat 447.511 kb on + strandat 447.511 kb on + strandat 447.512 kb on - strandat 447.512 kb on - strandat 447.512 kb on - strandat 447.554 kb on + strandat 447.714 kb on - strand, within LU632_RS02265at 447.714 kb on - strand, within LU632_RS02265at 447.715 kb on + strand, within LU632_RS02265at 447.785 kb on - strand, within LU632_RS02265at 447.975 kb on + strand, within LU632_RS02265at 448.102 kb on + strand, within LU632_RS02265at 448.116 kb on - strand, within LU632_RS02265at 448.180 kb on - strand, within LU632_RS02265at 448.325 kb on - strand, within LU632_RS02265at 448.388 kb on + strand, within LU632_RS02265at 448.389 kb on - strand, within LU632_RS02265at 448.390 kb on + strand, within LU632_RS02265at 448.390 kb on + strand, within LU632_RS02265at 448.390 kb on + strand, within LU632_RS02265at 448.390 kb on + strand, within LU632_RS02265at 448.390 kb on + strand, within LU632_RS02265at 448.396 kb on + strand, within LU632_RS02265at 448.396 kb on + strand, within LU632_RS02265at 448.397 kb on - strand, within LU632_RS02265at 448.397 kb on - strand, within LU632_RS02265at 448.401 kb on + strand, within LU632_RS02265at 448.401 kb on + strand, within LU632_RS02265at 448.402 kb on - strand, within LU632_RS02265at 448.402 kb on - strand, within LU632_RS02265at 448.408 kb on + strandat 448.408 kb on + strandat 448.408 kb on + strandat 448.408 kb on + strandat 448.408 kb on + strandat 448.409 kb on - strandat 448.409 kb on - strandat 448.411 kb on + strandat 448.412 kb on - strandat 448.477 kb on - strandat 448.500 kb on + strandat 448.528 kb on + strandat 448.528 kb on + strandat 448.528 kb on + strandat 448.529 kb on - strandat 448.584 kb on + strandat 448.591 kb on - strandat 448.622 kb on + strandat 448.623 kb on - strandat 448.640 kb on - strandat 448.664 kb on - strandat 448.698 kb on - strandat 448.698 kb on - strandat 448.698 kb on - strandat 448.728 kb on - strandat 448.849 kb on - strandat 448.850 kb on + strandat 448.876 kb on - strandat 448.899 kb on - strandat 448.994 kb on + strandat 449.280 kb on - strandat 449.341 kb on - strand, within LU632_RS02270at 449.408 kb on + strand, within LU632_RS02270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
remove
446,712 + +0.6
446,712 - +4.2
446,740 - -1.2
446,799 - +1.1
446,842 + LU632_RS02260 0.10 +0.3
446,864 - LU632_RS02260 0.14 -0.0
446,864 - LU632_RS02260 0.14 +1.5
446,864 - LU632_RS02260 0.14 -0.8
446,891 + LU632_RS02260 0.17 +1.0
446,891 + LU632_RS02260 0.17 +0.2
446,922 - LU632_RS02260 0.22 +0.2
446,922 - LU632_RS02260 0.22 +2.1
446,925 + LU632_RS02260 0.22 +0.4
446,926 - LU632_RS02260 0.22 -0.5
446,950 + LU632_RS02260 0.26 +0.8
446,972 + LU632_RS02260 0.29 +1.2
447,011 + LU632_RS02260 0.34 -0.6
447,011 + LU632_RS02260 0.34 +2.2
447,011 + LU632_RS02260 0.34 -0.0
447,122 + LU632_RS02260 0.50 -1.4
447,176 + LU632_RS02260 0.58 +1.4
447,297 + LU632_RS02260 0.75 +0.1
447,343 + LU632_RS02260 0.82 -1.1
447,363 + LU632_RS02260 0.84 -0.6
447,387 + LU632_RS02260 0.88 +1.3
447,506 + +2.6
447,507 - -0.4
447,511 + -1.8
447,511 + +1.8
447,512 - +0.0
447,512 - +1.2
447,512 - +0.4
447,554 + +0.6
447,714 - LU632_RS02265 0.13 -0.2
447,714 - LU632_RS02265 0.13 -0.2
447,715 + LU632_RS02265 0.13 +1.2
447,785 - LU632_RS02265 0.21 +1.5
447,975 + LU632_RS02265 0.42 +1.2
448,102 + LU632_RS02265 0.56 -1.4
448,116 - LU632_RS02265 0.58 -0.5
448,180 - LU632_RS02265 0.65 +2.2
448,325 - LU632_RS02265 0.81 -0.4
448,388 + LU632_RS02265 0.88 -0.8
448,389 - LU632_RS02265 0.88 -1.0
448,390 + LU632_RS02265 0.88 -1.1
448,390 + LU632_RS02265 0.88 +2.8
448,390 + LU632_RS02265 0.88 -1.6
448,390 + LU632_RS02265 0.88 +1.0
448,390 + LU632_RS02265 0.88 +0.0
448,396 + LU632_RS02265 0.89 -1.1
448,396 + LU632_RS02265 0.89 -1.4
448,397 - LU632_RS02265 0.89 -1.8
448,397 - LU632_RS02265 0.89 +0.1
448,401 + LU632_RS02265 0.89 +1.5
448,401 + LU632_RS02265 0.89 -0.2
448,402 - LU632_RS02265 0.89 -0.5
448,402 - LU632_RS02265 0.89 +1.2
448,408 + +1.3
448,408 + +2.6
448,408 + +3.2
448,408 + +0.2
448,408 + -0.0
448,409 - -0.4
448,409 - -0.1
448,411 + -1.2
448,412 - -0.0
448,477 - -2.4
448,500 + -0.6
448,528 + +0.2
448,528 + -2.7
448,528 + +0.0
448,529 - -1.2
448,584 + -1.4
448,591 - -0.4
448,622 + -1.3
448,623 - +1.0
448,640 - +0.4
448,664 - +0.2
448,698 - +1.0
448,698 - -0.8
448,698 - +1.9
448,728 - +2.1
448,849 - -1.0
448,850 + +0.0
448,876 - +0.5
448,899 - +1.8
448,994 + -0.3
449,280 - -1.2
449,341 - LU632_RS02270 0.10 -0.3
449,408 + LU632_RS02270 0.33 -1.1

Or see this region's nucleotide sequence