Experiment: Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01700 and LU632_RS01705 are separated by 38 nucleotides LU632_RS01705 and LU632_RS01710 are separated by 181 nucleotides LU632_RS01710 and LU632_RS01715 are separated by 147 nucleotides
LU632_RS01700: LU632_RS01700 - phage late control D family protein, at 334,833 to 335,969
_RS01700
LU632_RS01705: LU632_RS01705 - ogr/Delta-like zinc finger family protein, at 336,008 to 336,256
_RS01705
LU632_RS01710: LU632_RS01710 - hypothetical protein, at 336,438 to 337,049
_RS01710
LU632_RS01715: LU632_RS01715 - DUF1281 domain-containing protein, at 337,197 to 338,147
_RS01715
Position (kb) 336
337 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 335.116 kb on - strand, within LU632_RS01700 at 335.128 kb on - strand, within LU632_RS01700 at 335.215 kb on + strand, within LU632_RS01700 at 335.227 kb on + strand, within LU632_RS01700 at 335.326 kb on + strand, within LU632_RS01700 at 335.456 kb on + strand, within LU632_RS01700 at 335.538 kb on + strand, within LU632_RS01700 at 335.538 kb on + strand, within LU632_RS01700 at 335.539 kb on - strand, within LU632_RS01700 at 335.539 kb on - strand, within LU632_RS01700 at 335.658 kb on + strand, within LU632_RS01700 at 335.658 kb on + strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.659 kb on - strand, within LU632_RS01700 at 335.686 kb on - strand, within LU632_RS01700 at 335.703 kb on + strand, within LU632_RS01700 at 335.967 kb on + strand at 335.968 kb on - strand at 336.008 kb on - strand at 336.008 kb on - strand at 336.008 kb on - strand at 336.008 kb on - strand at 336.064 kb on + strand, within LU632_RS01705 at 336.070 kb on + strand, within LU632_RS01705 at 336.124 kb on + strand, within LU632_RS01705 at 336.124 kb on + strand, within LU632_RS01705 at 336.224 kb on + strand, within LU632_RS01705 at 336.225 kb on - strand, within LU632_RS01705 at 336.241 kb on - strand at 336.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 2 Petiole 1 (TE2-S-C2-P1) remove 335,116 - LU632_RS01700 0.25 +0.6 335,128 - LU632_RS01700 0.26 +0.1 335,215 + LU632_RS01700 0.34 -3.6 335,227 + LU632_RS01700 0.35 +1.2 335,326 + LU632_RS01700 0.43 -1.1 335,456 + LU632_RS01700 0.55 +1.7 335,538 + LU632_RS01700 0.62 +0.2 335,538 + LU632_RS01700 0.62 -4.4 335,539 - LU632_RS01700 0.62 -0.8 335,539 - LU632_RS01700 0.62 -0.3 335,658 + LU632_RS01700 0.73 +1.2 335,658 + LU632_RS01700 0.73 -1.4 335,659 - LU632_RS01700 0.73 -1.0 335,659 - LU632_RS01700 0.73 -0.7 335,659 - LU632_RS01700 0.73 +2.4 335,686 - LU632_RS01700 0.75 +0.5 335,703 + LU632_RS01700 0.77 +0.3 335,967 + +1.0 335,968 - -0.4 336,008 - +1.7 336,008 - +0.9 336,008 - +1.8 336,008 - -1.0 336,064 + LU632_RS01705 0.22 -1.7 336,070 + LU632_RS01705 0.25 -1.6 336,124 + LU632_RS01705 0.47 -1.4 336,124 + LU632_RS01705 0.47 -0.4 336,224 + LU632_RS01705 0.87 +0.0 336,225 - LU632_RS01705 0.87 +0.9 336,241 - -1.6 336,354 - +0.1
Or see this region's nucleotide sequence