Experiment: HSDP5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04417 and OHPLBJKB_04418 are separated by 901 nucleotides OHPLBJKB_04418 and OHPLBJKB_04419 are separated by 216 nucleotides OHPLBJKB_04419 and OHPLBJKB_04420 overlap by 4 nucleotides
OHPLBJKB_04417: OHPLBJKB_04417 - hypothetical protein, at 69,788 to 70,075
_04417
OHPLBJKB_04418: OHPLBJKB_04418 - Protein FlmC, at 70,977 to 71,189
_04418
OHPLBJKB_04419: OHPLBJKB_04419 - hypothetical protein, at 71,406 to 72,125
_04419
OHPLBJKB_04420: OHPLBJKB_04420 - Protein PsiB, at 72,122 to 72,556
_04420
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.039 kb on - strand, within OHPLBJKB_04417 at 70.060 kb on + strand at 70.060 kb on + strand at 70.452 kb on + strand at 70.452 kb on + strand at 70.713 kb on + strand at 70.714 kb on - strand at 70.853 kb on - strand at 70.853 kb on - strand at 70.853 kb on - strand at 70.902 kb on - strand at 70.974 kb on + strand at 71.062 kb on - strand, within OHPLBJKB_04418 at 71.062 kb on - strand, within OHPLBJKB_04418 at 71.124 kb on - strand, within OHPLBJKB_04418 at 71.310 kb on + strand at 71.501 kb on + strand, within OHPLBJKB_04419 at 71.743 kb on + strand, within OHPLBJKB_04419 at 71.743 kb on + strand, within OHPLBJKB_04419 at 71.744 kb on - strand, within OHPLBJKB_04419 at 71.887 kb on + strand, within OHPLBJKB_04419 at 71.887 kb on + strand, within OHPLBJKB_04419 at 71.888 kb on - strand, within OHPLBJKB_04419 at 71.888 kb on - strand, within OHPLBJKB_04419 at 71.888 kb on - strand, within OHPLBJKB_04419 at 72.117 kb on + strand at 72.117 kb on + strand at 72.118 kb on - strand at 72.118 kb on - strand at 72.125 kb on + strand at 72.125 kb on + strand at 72.126 kb on - strand at 72.126 kb on - strand at 72.152 kb on - strand at 72.184 kb on + strand, within OHPLBJKB_04420
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP5 remove 70,039 - OHPLBJKB_04417 0.87 -1.8 70,060 + +0.8 70,060 + -0.8 70,452 + +1.4 70,452 + +1.3 70,713 + +0.8 70,714 - +0.1 70,853 - +0.2 70,853 - -0.4 70,853 - +0.8 70,902 - +0.2 70,974 + -0.8 71,062 - OHPLBJKB_04418 0.40 +0.2 71,062 - OHPLBJKB_04418 0.40 +1.4 71,124 - OHPLBJKB_04418 0.69 +1.1 71,310 + -1.0 71,501 + OHPLBJKB_04419 0.13 -0.2 71,743 + OHPLBJKB_04419 0.47 +0.4 71,743 + OHPLBJKB_04419 0.47 -1.0 71,744 - OHPLBJKB_04419 0.47 +0.4 71,887 + OHPLBJKB_04419 0.67 -0.8 71,887 + OHPLBJKB_04419 0.67 -0.6 71,888 - OHPLBJKB_04419 0.67 +2.4 71,888 - OHPLBJKB_04419 0.67 +1.1 71,888 - OHPLBJKB_04419 0.67 -0.2 72,117 + -0.2 72,117 + +0.4 72,118 - +0.8 72,118 - +1.5 72,125 + -0.2 72,125 + -0.8 72,126 - -0.1 72,126 - -0.4 72,152 - -0.8 72,184 + OHPLBJKB_04420 0.14 +0.8
Or see this region's nucleotide sequence