Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04404

Experiment: HSDP5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_04402 and OHPLBJKB_04403 are separated by 348 nucleotidesOHPLBJKB_04403 and OHPLBJKB_04404 overlap by 4 nucleotidesOHPLBJKB_04404 and OHPLBJKB_04405 are separated by 11 nucleotidesOHPLBJKB_04405 and OHPLBJKB_04406 overlap by 14 nucleotidesOHPLBJKB_04406 and OHPLBJKB_04407 overlap by 11 nucleotides OHPLBJKB_04402: OHPLBJKB_04402 - hypothetical protein, at 60,430 to 60,534 _04402 OHPLBJKB_04403: OHPLBJKB_04403 - Protein TraV, at 60,883 to 61,398 _04403 OHPLBJKB_04404: OHPLBJKB_04404 - hypothetical protein, at 61,395 to 61,646 _04404 OHPLBJKB_04405: OHPLBJKB_04405 - hypothetical protein, at 61,658 to 61,855 _04405 OHPLBJKB_04406: OHPLBJKB_04406 - hypothetical protein, at 61,842 to 62,432 _04406 OHPLBJKB_04407: OHPLBJKB_04407 - hypothetical protein, at 62,422 to 63,849 _04407 Position (kb) 61 62Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 60.421 kb on + strandat 60.428 kb on - strandat 60.431 kb on + strandat 60.511 kb on - strand, within OHPLBJKB_04402at 60.511 kb on - strand, within OHPLBJKB_04402at 60.528 kb on + strandat 60.529 kb on - strandat 60.866 kb on + strandat 60.918 kb on + strandat 60.951 kb on - strand, within OHPLBJKB_04403at 60.970 kb on - strand, within OHPLBJKB_04403at 60.971 kb on + strand, within OHPLBJKB_04403at 60.971 kb on + strand, within OHPLBJKB_04403at 60.972 kb on - strand, within OHPLBJKB_04403at 61.083 kb on + strand, within OHPLBJKB_04403at 61.291 kb on - strand, within OHPLBJKB_04403at 61.291 kb on - strand, within OHPLBJKB_04403at 61.354 kb on + strandat 61.355 kb on - strandat 61.355 kb on - strandat 61.357 kb on + strandat 61.357 kb on + strandat 61.505 kb on + strand, within OHPLBJKB_04404at 61.506 kb on - strand, within OHPLBJKB_04404at 61.508 kb on - strand, within OHPLBJKB_04404at 61.513 kb on + strand, within OHPLBJKB_04404at 61.513 kb on + strand, within OHPLBJKB_04404at 61.640 kb on + strandat 61.640 kb on + strandat 61.696 kb on + strand, within OHPLBJKB_04405at 61.749 kb on - strand, within OHPLBJKB_04405at 61.786 kb on + strand, within OHPLBJKB_04405at 61.828 kb on + strand, within OHPLBJKB_04405at 61.828 kb on + strand, within OHPLBJKB_04405at 61.831 kb on + strand, within OHPLBJKB_04405at 61.832 kb on - strand, within OHPLBJKB_04405at 61.838 kb on - strandat 61.840 kb on + strandat 61.843 kb on + strandat 61.844 kb on - strandat 62.044 kb on + strand, within OHPLBJKB_04406at 62.044 kb on + strand, within OHPLBJKB_04406at 62.044 kb on + strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.045 kb on - strand, within OHPLBJKB_04406at 62.113 kb on + strand, within OHPLBJKB_04406at 62.114 kb on - strand, within OHPLBJKB_04406at 62.154 kb on + strand, within OHPLBJKB_04406at 62.155 kb on - strand, within OHPLBJKB_04406at 62.155 kb on - strand, within OHPLBJKB_04406at 62.244 kb on - strand, within OHPLBJKB_04406at 62.289 kb on + strand, within OHPLBJKB_04406at 62.290 kb on - strand, within OHPLBJKB_04406at 62.420 kb on + strandat 62.421 kb on - strandat 62.423 kb on + strandat 62.423 kb on + strandat 62.423 kb on + strandat 62.424 kb on - strandat 62.424 kb on - strandat 62.511 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
remove
60,421 + +1.0
60,428 - +0.8
60,431 + +1.0
60,511 - OHPLBJKB_04402 0.77 +0.1
60,511 - OHPLBJKB_04402 0.77 -0.8
60,528 + -0.9
60,529 - -0.2
60,866 + +4.4
60,918 + +4.8
60,951 - OHPLBJKB_04403 0.13 +3.8
60,970 - OHPLBJKB_04403 0.17 +4.6
60,971 + OHPLBJKB_04403 0.17 +3.4
60,971 + OHPLBJKB_04403 0.17 +4.3
60,972 - OHPLBJKB_04403 0.17 +4.3
61,083 + OHPLBJKB_04403 0.39 +4.2
61,291 - OHPLBJKB_04403 0.79 +3.8
61,291 - OHPLBJKB_04403 0.79 +1.8
61,354 + +3.8
61,355 - +3.1
61,355 - +3.9
61,357 + +4.9
61,357 + +5.5
61,505 + OHPLBJKB_04404 0.44 +5.1
61,506 - OHPLBJKB_04404 0.44 -0.4
61,508 - OHPLBJKB_04404 0.45 +1.1
61,513 + OHPLBJKB_04404 0.47 +5.7
61,513 + OHPLBJKB_04404 0.47 +5.8
61,640 + +5.5
61,640 + +5.6
61,696 + OHPLBJKB_04405 0.19 +3.8
61,749 - OHPLBJKB_04405 0.46 +1.4
61,786 + OHPLBJKB_04405 0.65 +4.8
61,828 + OHPLBJKB_04405 0.86 +4.5
61,828 + OHPLBJKB_04405 0.86 +5.0
61,831 + OHPLBJKB_04405 0.87 +3.8
61,832 - OHPLBJKB_04405 0.88 +0.2
61,838 - +0.2
61,840 + +4.0
61,843 + +4.2
61,844 - +0.6
62,044 + OHPLBJKB_04406 0.34 +6.6
62,044 + OHPLBJKB_04406 0.34 +5.2
62,044 + OHPLBJKB_04406 0.34 +5.5
62,045 - OHPLBJKB_04406 0.34 +0.2
62,045 - OHPLBJKB_04406 0.34 -0.8
62,045 - OHPLBJKB_04406 0.34 +1.4
62,045 - OHPLBJKB_04406 0.34 -1.0
62,045 - OHPLBJKB_04406 0.34 -0.8
62,045 - OHPLBJKB_04406 0.34 -1.2
62,045 - OHPLBJKB_04406 0.34 +0.8
62,113 + OHPLBJKB_04406 0.46 +4.5
62,114 - OHPLBJKB_04406 0.46 +1.1
62,154 + OHPLBJKB_04406 0.53 +0.6
62,155 - OHPLBJKB_04406 0.53 +1.8
62,155 - OHPLBJKB_04406 0.53 -1.3
62,244 - OHPLBJKB_04406 0.68 +2.0
62,289 + OHPLBJKB_04406 0.76 +6.2
62,290 - OHPLBJKB_04406 0.76 +0.0
62,420 + +4.6
62,421 - +3.1
62,423 + +5.1
62,423 + +5.7
62,423 + +4.5
62,424 - +0.8
62,424 - +0.5
62,511 + +4.4

Or see this region's nucleotide sequence