Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02232

Experiment: HSDP5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02231 and OHPLBJKB_02232 overlap by 4 nucleotidesOHPLBJKB_02232 and OHPLBJKB_02233 overlap by 4 nucleotidesOHPLBJKB_02233 and OHPLBJKB_02234 overlap by 8 nucleotides OHPLBJKB_02231: OHPLBJKB_02231 - putative D,D-dipeptide transport system permease protein DdpB, at 2,324,903 to 2,325,925 _02231 OHPLBJKB_02232: OHPLBJKB_02232 - putative D,D-dipeptide transport system permease protein DdpC, at 2,325,922 to 2,326,818 _02232 OHPLBJKB_02233: OHPLBJKB_02233 - putative D,D-dipeptide transport ATP-binding protein DdpD, at 2,326,815 to 2,327,801 _02233 OHPLBJKB_02234: OHPLBJKB_02234 - putative D,D-dipeptide transport ATP-binding protein DdpF, at 2,327,794 to 2,328,720 _02234 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2324.974 kb on + strandat 2324.980 kb on + strandat 2324.980 kb on + strandat 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.092 kb on + strand, within OHPLBJKB_02231at 2325.093 kb on - strand, within OHPLBJKB_02231at 2325.093 kb on - strand, within OHPLBJKB_02231at 2325.093 kb on - strand, within OHPLBJKB_02231at 2325.093 kb on - strand, within OHPLBJKB_02231at 2325.093 kb on - strand, within OHPLBJKB_02231at 2325.096 kb on + strand, within OHPLBJKB_02231at 2325.097 kb on - strand, within OHPLBJKB_02231at 2325.184 kb on + strand, within OHPLBJKB_02231at 2325.185 kb on - strand, within OHPLBJKB_02231at 2325.261 kb on + strand, within OHPLBJKB_02231at 2325.262 kb on - strand, within OHPLBJKB_02231at 2325.375 kb on - strand, within OHPLBJKB_02231at 2325.375 kb on - strand, within OHPLBJKB_02231at 2325.416 kb on + strand, within OHPLBJKB_02231at 2325.417 kb on - strand, within OHPLBJKB_02231at 2325.452 kb on + strand, within OHPLBJKB_02231at 2325.453 kb on - strand, within OHPLBJKB_02231at 2325.479 kb on - strand, within OHPLBJKB_02231at 2325.605 kb on + strand, within OHPLBJKB_02231at 2325.605 kb on + strand, within OHPLBJKB_02231at 2325.644 kb on + strand, within OHPLBJKB_02231at 2325.644 kb on + strand, within OHPLBJKB_02231at 2325.644 kb on + strand, within OHPLBJKB_02231at 2325.644 kb on + strand, within OHPLBJKB_02231at 2325.645 kb on - strand, within OHPLBJKB_02231at 2325.645 kb on - strand, within OHPLBJKB_02231at 2325.645 kb on - strand, within OHPLBJKB_02231at 2325.646 kb on + strand, within OHPLBJKB_02231at 2325.654 kb on + strand, within OHPLBJKB_02231at 2325.654 kb on + strand, within OHPLBJKB_02231at 2325.654 kb on + strand, within OHPLBJKB_02231at 2325.654 kb on + strand, within OHPLBJKB_02231at 2325.654 kb on + strand, within OHPLBJKB_02231at 2325.655 kb on - strand, within OHPLBJKB_02231at 2325.655 kb on - strand, within OHPLBJKB_02231at 2325.655 kb on - strand, within OHPLBJKB_02231at 2325.783 kb on + strand, within OHPLBJKB_02231at 2325.784 kb on - strand, within OHPLBJKB_02231at 2325.784 kb on - strand, within OHPLBJKB_02231at 2325.848 kb on + strandat 2325.848 kb on + strandat 2325.881 kb on + strandat 2325.881 kb on + strandat 2325.929 kb on + strandat 2325.992 kb on + strandat 2326.043 kb on + strand, within OHPLBJKB_02232at 2326.043 kb on + strand, within OHPLBJKB_02232at 2326.044 kb on - strand, within OHPLBJKB_02232at 2326.044 kb on - strand, within OHPLBJKB_02232at 2326.044 kb on - strand, within OHPLBJKB_02232at 2326.044 kb on - strand, within OHPLBJKB_02232at 2326.046 kb on + strand, within OHPLBJKB_02232at 2326.109 kb on + strand, within OHPLBJKB_02232at 2326.109 kb on + strand, within OHPLBJKB_02232at 2326.229 kb on + strand, within OHPLBJKB_02232at 2326.230 kb on - strand, within OHPLBJKB_02232at 2326.230 kb on - strand, within OHPLBJKB_02232at 2326.230 kb on - strand, within OHPLBJKB_02232at 2326.326 kb on + strand, within OHPLBJKB_02232at 2326.327 kb on - strand, within OHPLBJKB_02232at 2326.392 kb on + strand, within OHPLBJKB_02232at 2326.413 kb on + strand, within OHPLBJKB_02232at 2326.413 kb on + strand, within OHPLBJKB_02232at 2326.413 kb on + strand, within OHPLBJKB_02232at 2326.414 kb on - strand, within OHPLBJKB_02232at 2326.414 kb on - strand, within OHPLBJKB_02232at 2326.414 kb on - strand, within OHPLBJKB_02232at 2326.415 kb on + strand, within OHPLBJKB_02232at 2326.460 kb on + strand, within OHPLBJKB_02232at 2326.460 kb on + strand, within OHPLBJKB_02232at 2326.460 kb on + strand, within OHPLBJKB_02232at 2326.466 kb on + strand, within OHPLBJKB_02232at 2326.467 kb on - strand, within OHPLBJKB_02232at 2326.467 kb on - strand, within OHPLBJKB_02232at 2326.474 kb on + strand, within OHPLBJKB_02232at 2326.474 kb on + strand, within OHPLBJKB_02232at 2326.475 kb on - strand, within OHPLBJKB_02232at 2326.476 kb on + strand, within OHPLBJKB_02232at 2326.476 kb on + strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.477 kb on - strand, within OHPLBJKB_02232at 2326.480 kb on + strand, within OHPLBJKB_02232at 2326.480 kb on + strand, within OHPLBJKB_02232at 2326.480 kb on + strand, within OHPLBJKB_02232at 2326.480 kb on + strand, within OHPLBJKB_02232at 2326.480 kb on + strand, within OHPLBJKB_02232at 2326.480 kb on + strand, within OHPLBJKB_02232at 2326.480 kb on + strand, within OHPLBJKB_02232at 2326.481 kb on - strand, within OHPLBJKB_02232at 2326.481 kb on - strand, within OHPLBJKB_02232at 2326.481 kb on - strand, within OHPLBJKB_02232at 2326.481 kb on - strand, within OHPLBJKB_02232at 2326.481 kb on - strand, within OHPLBJKB_02232at 2326.542 kb on - strand, within OHPLBJKB_02232at 2326.546 kb on - strand, within OHPLBJKB_02232at 2326.546 kb on - strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.687 kb on + strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.688 kb on - strand, within OHPLBJKB_02232at 2326.691 kb on + strand, within OHPLBJKB_02232at 2326.708 kb on + strand, within OHPLBJKB_02232at 2326.755 kb on + strandat 2326.979 kb on + strand, within OHPLBJKB_02233at 2327.004 kb on + strand, within OHPLBJKB_02233at 2327.005 kb on - strand, within OHPLBJKB_02233at 2327.011 kb on + strand, within OHPLBJKB_02233at 2327.011 kb on + strand, within OHPLBJKB_02233at 2327.012 kb on - strand, within OHPLBJKB_02233at 2327.012 kb on - strand, within OHPLBJKB_02233at 2327.210 kb on + strand, within OHPLBJKB_02233at 2327.261 kb on + strand, within OHPLBJKB_02233at 2327.262 kb on - strand, within OHPLBJKB_02233at 2327.418 kb on - strand, within OHPLBJKB_02233at 2327.462 kb on + strand, within OHPLBJKB_02233at 2327.496 kb on + strand, within OHPLBJKB_02233at 2327.497 kb on - strand, within OHPLBJKB_02233at 2327.505 kb on + strand, within OHPLBJKB_02233at 2327.505 kb on + strand, within OHPLBJKB_02233at 2327.506 kb on - strand, within OHPLBJKB_02233at 2327.568 kb on + strand, within OHPLBJKB_02233at 2327.568 kb on + strand, within OHPLBJKB_02233at 2327.569 kb on - strand, within OHPLBJKB_02233at 2327.608 kb on + strand, within OHPLBJKB_02233at 2327.608 kb on + strand, within OHPLBJKB_02233at 2327.620 kb on + strand, within OHPLBJKB_02233at 2327.620 kb on + strand, within OHPLBJKB_02233at 2327.620 kb on + strand, within OHPLBJKB_02233at 2327.791 kb on + strandat 2327.791 kb on + strandat 2327.791 kb on + strandat 2327.792 kb on - strandat 2327.792 kb on - strandat 2327.792 kb on - strandat 2327.792 kb on - strandat 2327.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
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2,324,974 + +0.4
2,324,980 + -0.4
2,324,980 + -0.2
2,325,092 + OHPLBJKB_02231 0.18 +1.2
2,325,092 + OHPLBJKB_02231 0.18 +0.6
2,325,092 + OHPLBJKB_02231 0.18 -1.3
2,325,092 + OHPLBJKB_02231 0.18 +0.1
2,325,092 + OHPLBJKB_02231 0.18 -0.3
2,325,092 + OHPLBJKB_02231 0.18 -0.4
2,325,092 + OHPLBJKB_02231 0.18 -0.9
2,325,092 + OHPLBJKB_02231 0.18 -1.7
2,325,093 - OHPLBJKB_02231 0.19 -0.2
2,325,093 - OHPLBJKB_02231 0.19 +1.1
2,325,093 - OHPLBJKB_02231 0.19 +0.6
2,325,093 - OHPLBJKB_02231 0.19 -0.2
2,325,093 - OHPLBJKB_02231 0.19 -1.2
2,325,096 + OHPLBJKB_02231 0.19 -1.5
2,325,097 - OHPLBJKB_02231 0.19 +0.1
2,325,184 + OHPLBJKB_02231 0.27 +2.6
2,325,185 - OHPLBJKB_02231 0.28 -1.1
2,325,261 + OHPLBJKB_02231 0.35 +0.6
2,325,262 - OHPLBJKB_02231 0.35 -1.0
2,325,375 - OHPLBJKB_02231 0.46 +0.3
2,325,375 - OHPLBJKB_02231 0.46 -0.1
2,325,416 + OHPLBJKB_02231 0.50 +1.2
2,325,417 - OHPLBJKB_02231 0.50 +1.5
2,325,452 + OHPLBJKB_02231 0.54 -0.1
2,325,453 - OHPLBJKB_02231 0.54 +1.1
2,325,479 - OHPLBJKB_02231 0.56 +0.5
2,325,605 + OHPLBJKB_02231 0.69 +0.5
2,325,605 + OHPLBJKB_02231 0.69 -0.2
2,325,644 + OHPLBJKB_02231 0.72 +0.7
2,325,644 + OHPLBJKB_02231 0.72 +1.6
2,325,644 + OHPLBJKB_02231 0.72 -0.4
2,325,644 + OHPLBJKB_02231 0.72 -0.2
2,325,645 - OHPLBJKB_02231 0.73 +1.4
2,325,645 - OHPLBJKB_02231 0.73 +1.4
2,325,645 - OHPLBJKB_02231 0.73 -1.2
2,325,646 + OHPLBJKB_02231 0.73 -0.8
2,325,654 + OHPLBJKB_02231 0.73 +0.6
2,325,654 + OHPLBJKB_02231 0.73 +0.1
2,325,654 + OHPLBJKB_02231 0.73 -0.2
2,325,654 + OHPLBJKB_02231 0.73 +0.4
2,325,654 + OHPLBJKB_02231 0.73 +0.5
2,325,655 - OHPLBJKB_02231 0.74 -1.6
2,325,655 - OHPLBJKB_02231 0.74 +0.3
2,325,655 - OHPLBJKB_02231 0.74 -0.6
2,325,783 + OHPLBJKB_02231 0.86 -1.3
2,325,784 - OHPLBJKB_02231 0.86 +0.6
2,325,784 - OHPLBJKB_02231 0.86 +0.1
2,325,848 + -0.5
2,325,848 + +0.2
2,325,881 + +0.2
2,325,881 + -0.3
2,325,929 + +0.4
2,325,992 + +0.6
2,326,043 + OHPLBJKB_02232 0.13 +1.5
2,326,043 + OHPLBJKB_02232 0.13 +0.4
2,326,044 - OHPLBJKB_02232 0.14 -0.1
2,326,044 - OHPLBJKB_02232 0.14 -0.2
2,326,044 - OHPLBJKB_02232 0.14 +0.6
2,326,044 - OHPLBJKB_02232 0.14 +0.3
2,326,046 + OHPLBJKB_02232 0.14 -0.1
2,326,109 + OHPLBJKB_02232 0.21 -0.2
2,326,109 + OHPLBJKB_02232 0.21 +1.8
2,326,229 + OHPLBJKB_02232 0.34 +1.2
2,326,230 - OHPLBJKB_02232 0.34 +0.1
2,326,230 - OHPLBJKB_02232 0.34 +1.2
2,326,230 - OHPLBJKB_02232 0.34 -0.9
2,326,326 + OHPLBJKB_02232 0.45 +0.9
2,326,327 - OHPLBJKB_02232 0.45 -2.9
2,326,392 + OHPLBJKB_02232 0.52 +0.8
2,326,413 + OHPLBJKB_02232 0.55 +1.5
2,326,413 + OHPLBJKB_02232 0.55 +0.3
2,326,413 + OHPLBJKB_02232 0.55 -1.0
2,326,414 - OHPLBJKB_02232 0.55 +0.5
2,326,414 - OHPLBJKB_02232 0.55 -0.6
2,326,414 - OHPLBJKB_02232 0.55 -0.7
2,326,415 + OHPLBJKB_02232 0.55 -2.1
2,326,460 + OHPLBJKB_02232 0.60 +0.3
2,326,460 + OHPLBJKB_02232 0.60 -0.6
2,326,460 + OHPLBJKB_02232 0.60 -1.6
2,326,466 + OHPLBJKB_02232 0.61 +0.3
2,326,467 - OHPLBJKB_02232 0.61 +0.4
2,326,467 - OHPLBJKB_02232 0.61 -0.0
2,326,474 + OHPLBJKB_02232 0.62 +1.1
2,326,474 + OHPLBJKB_02232 0.62 +0.6
2,326,475 - OHPLBJKB_02232 0.62 +1.0
2,326,476 + OHPLBJKB_02232 0.62 +0.1
2,326,476 + OHPLBJKB_02232 0.62 -0.9
2,326,477 - OHPLBJKB_02232 0.62 +0.1
2,326,477 - OHPLBJKB_02232 0.62 +1.3
2,326,477 - OHPLBJKB_02232 0.62 +0.1
2,326,477 - OHPLBJKB_02232 0.62 -0.4
2,326,477 - OHPLBJKB_02232 0.62 -0.4
2,326,477 - OHPLBJKB_02232 0.62 +0.3
2,326,477 - OHPLBJKB_02232 0.62 -0.7
2,326,477 - OHPLBJKB_02232 0.62 +0.1
2,326,477 - OHPLBJKB_02232 0.62 +0.6
2,326,480 + OHPLBJKB_02232 0.62 -1.3
2,326,480 + OHPLBJKB_02232 0.62 -0.7
2,326,480 + OHPLBJKB_02232 0.62 -1.1
2,326,480 + OHPLBJKB_02232 0.62 -1.4
2,326,480 + OHPLBJKB_02232 0.62 -0.5
2,326,480 + OHPLBJKB_02232 0.62 +0.5
2,326,480 + OHPLBJKB_02232 0.62 +0.6
2,326,481 - OHPLBJKB_02232 0.62 -1.8
2,326,481 - OHPLBJKB_02232 0.62 -0.6
2,326,481 - OHPLBJKB_02232 0.62 +1.1
2,326,481 - OHPLBJKB_02232 0.62 -0.2
2,326,481 - OHPLBJKB_02232 0.62 -0.5
2,326,542 - OHPLBJKB_02232 0.69 +0.9
2,326,546 - OHPLBJKB_02232 0.70 +1.1
2,326,546 - OHPLBJKB_02232 0.70 -0.4
2,326,687 + OHPLBJKB_02232 0.85 -1.2
2,326,687 + OHPLBJKB_02232 0.85 +0.8
2,326,687 + OHPLBJKB_02232 0.85 +0.4
2,326,687 + OHPLBJKB_02232 0.85 +0.6
2,326,687 + OHPLBJKB_02232 0.85 +0.8
2,326,687 + OHPLBJKB_02232 0.85 -0.9
2,326,687 + OHPLBJKB_02232 0.85 -0.5
2,326,687 + OHPLBJKB_02232 0.85 +0.2
2,326,687 + OHPLBJKB_02232 0.85 -0.7
2,326,687 + OHPLBJKB_02232 0.85 -1.4
2,326,688 - OHPLBJKB_02232 0.85 -1.5
2,326,688 - OHPLBJKB_02232 0.85 -0.7
2,326,688 - OHPLBJKB_02232 0.85 +0.9
2,326,688 - OHPLBJKB_02232 0.85 -0.9
2,326,688 - OHPLBJKB_02232 0.85 +0.1
2,326,688 - OHPLBJKB_02232 0.85 -0.6
2,326,688 - OHPLBJKB_02232 0.85 +0.6
2,326,688 - OHPLBJKB_02232 0.85 +0.9
2,326,688 - OHPLBJKB_02232 0.85 +1.7
2,326,688 - OHPLBJKB_02232 0.85 -0.2
2,326,688 - OHPLBJKB_02232 0.85 +0.4
2,326,688 - OHPLBJKB_02232 0.85 +0.4
2,326,688 - OHPLBJKB_02232 0.85 -0.2
2,326,688 - OHPLBJKB_02232 0.85 +1.3
2,326,691 + OHPLBJKB_02232 0.86 +0.7
2,326,708 + OHPLBJKB_02232 0.88 +0.1
2,326,755 + -0.1
2,326,979 + OHPLBJKB_02233 0.17 +1.8
2,327,004 + OHPLBJKB_02233 0.19 +0.4
2,327,005 - OHPLBJKB_02233 0.19 -2.1
2,327,011 + OHPLBJKB_02233 0.20 +0.2
2,327,011 + OHPLBJKB_02233 0.20 +0.1
2,327,012 - OHPLBJKB_02233 0.20 +0.2
2,327,012 - OHPLBJKB_02233 0.20 -0.7
2,327,210 + OHPLBJKB_02233 0.40 +0.0
2,327,261 + OHPLBJKB_02233 0.45 -0.7
2,327,262 - OHPLBJKB_02233 0.45 -1.2
2,327,418 - OHPLBJKB_02233 0.61 -0.0
2,327,462 + OHPLBJKB_02233 0.66 -0.1
2,327,496 + OHPLBJKB_02233 0.69 -1.2
2,327,497 - OHPLBJKB_02233 0.69 +0.7
2,327,505 + OHPLBJKB_02233 0.70 -1.2
2,327,505 + OHPLBJKB_02233 0.70 -0.5
2,327,506 - OHPLBJKB_02233 0.70 +0.2
2,327,568 + OHPLBJKB_02233 0.76 -0.4
2,327,568 + OHPLBJKB_02233 0.76 +0.2
2,327,569 - OHPLBJKB_02233 0.76 -0.8
2,327,608 + OHPLBJKB_02233 0.80 +0.4
2,327,608 + OHPLBJKB_02233 0.80 +0.1
2,327,620 + OHPLBJKB_02233 0.82 -1.8
2,327,620 + OHPLBJKB_02233 0.82 -1.2
2,327,620 + OHPLBJKB_02233 0.82 +1.9
2,327,791 + -0.1
2,327,791 + +1.2
2,327,791 + -0.2
2,327,792 - +1.4
2,327,792 - +0.6
2,327,792 - -0.5
2,327,792 - -0.0
2,327,792 - -0.2

Or see this region's nucleotide sequence