Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00564

Experiment: HSDP5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00562 and OHPLBJKB_00563 are separated by 38 nucleotidesOHPLBJKB_00563 and OHPLBJKB_00564 are separated by 166 nucleotidesOHPLBJKB_00564 and OHPLBJKB_00565 are separated by 12 nucleotides OHPLBJKB_00562: OHPLBJKB_00562 - N-acetylgalactosamine permease IIC component 1, at 574,488 to 575,291 _00562 OHPLBJKB_00563: OHPLBJKB_00563 - PTS system sorbose-specific EIIB component, at 575,330 to 575,806 _00563 OHPLBJKB_00564: OHPLBJKB_00564 - D-tagatose-1,6-bisphosphate aldolase subunit KbaY, at 575,973 to 576,833 _00564 OHPLBJKB_00565: OHPLBJKB_00565 - Putative D-galactosamine-6-phosphate deaminase AgaS, at 576,846 to 578,000 _00565 Position (kb) 575 576 577Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 574.982 kb on + strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 574.982 kb on + strand, within OHPLBJKB_00562at 575.275 kb on - strandat 575.408 kb on + strand, within OHPLBJKB_00563at 575.520 kb on - strand, within OHPLBJKB_00563at 575.528 kb on - strand, within OHPLBJKB_00563at 575.653 kb on + strand, within OHPLBJKB_00563at 575.654 kb on - strand, within OHPLBJKB_00563at 575.674 kb on + strand, within OHPLBJKB_00563at 575.706 kb on - strand, within OHPLBJKB_00563at 575.943 kb on - strandat 576.056 kb on + strandat 576.058 kb on + strandat 576.058 kb on + strandat 576.059 kb on - strand, within OHPLBJKB_00564at 576.123 kb on + strand, within OHPLBJKB_00564at 576.286 kb on + strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.289 kb on - strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.629 kb on - strand, within OHPLBJKB_00564at 576.636 kb on - strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.647 kb on - strand, within OHPLBJKB_00564at 576.647 kb on - strand, within OHPLBJKB_00564at 576.764 kb on + strandat 576.811 kb on + strandat 576.811 kb on + strandat 576.811 kb on + strandat 576.812 kb on - strandat 576.812 kb on - strandat 576.815 kb on + strandat 576.825 kb on - strandat 576.833 kb on + strandat 576.833 kb on + strandat 576.834 kb on - strandat 576.847 kb on + strandat 576.848 kb on - strandat 576.848 kb on - strandat 576.870 kb on + strandat 576.871 kb on - strandat 576.923 kb on + strandat 576.967 kb on + strand, within OHPLBJKB_00565at 576.968 kb on - strand, within OHPLBJKB_00565at 576.968 kb on - strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.129 kb on + strand, within OHPLBJKB_00565at 577.130 kb on - strand, within OHPLBJKB_00565at 577.130 kb on - strand, within OHPLBJKB_00565at 577.141 kb on + strand, within OHPLBJKB_00565at 577.161 kb on + strand, within OHPLBJKB_00565at 577.161 kb on + strand, within OHPLBJKB_00565at 577.162 kb on - strand, within OHPLBJKB_00565at 577.162 kb on - strand, within OHPLBJKB_00565at 577.229 kb on - strand, within OHPLBJKB_00565at 577.229 kb on - strand, within OHPLBJKB_00565at 577.296 kb on + strand, within OHPLBJKB_00565at 577.297 kb on - strand, within OHPLBJKB_00565at 577.708 kb on + strand, within OHPLBJKB_00565at 577.767 kb on - strand, within OHPLBJKB_00565

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
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574,982 + OHPLBJKB_00562 0.61 +0.2
574,982 + OHPLBJKB_00562 0.61 +0.7
574,982 + OHPLBJKB_00562 0.61 +0.7
575,275 - -1.6
575,408 + OHPLBJKB_00563 0.16 -0.8
575,520 - OHPLBJKB_00563 0.40 -0.3
575,528 - OHPLBJKB_00563 0.42 +0.7
575,653 + OHPLBJKB_00563 0.68 -0.1
575,654 - OHPLBJKB_00563 0.68 +1.2
575,674 + OHPLBJKB_00563 0.72 +0.6
575,706 - OHPLBJKB_00563 0.79 -0.8
575,943 - -1.0
576,056 + -0.3
576,058 + -0.4
576,058 + -0.0
576,059 - OHPLBJKB_00564 0.10 -1.1
576,123 + OHPLBJKB_00564 0.17 -0.1
576,286 + OHPLBJKB_00564 0.36 -0.0
576,287 - OHPLBJKB_00564 0.36 -0.1
576,287 - OHPLBJKB_00564 0.36 +0.6
576,288 + OHPLBJKB_00564 0.37 -0.7
576,288 + OHPLBJKB_00564 0.37 -0.9
576,288 + OHPLBJKB_00564 0.37 +0.5
576,288 + OHPLBJKB_00564 0.37 -0.3
576,289 - OHPLBJKB_00564 0.37 +0.9
576,616 + OHPLBJKB_00564 0.75 +0.1
576,616 + OHPLBJKB_00564 0.75 +0.1
576,616 + OHPLBJKB_00564 0.75 -0.3
576,616 + OHPLBJKB_00564 0.75 -0.6
576,616 + OHPLBJKB_00564 0.75 +0.7
576,616 + OHPLBJKB_00564 0.75 +0.1
576,616 + OHPLBJKB_00564 0.75 +0.8
576,617 - OHPLBJKB_00564 0.75 -0.2
576,617 - OHPLBJKB_00564 0.75 +0.2
576,617 - OHPLBJKB_00564 0.75 +0.3
576,629 - OHPLBJKB_00564 0.76 -0.2
576,636 - OHPLBJKB_00564 0.77 +1.7
576,646 + OHPLBJKB_00564 0.78 -0.5
576,646 + OHPLBJKB_00564 0.78 -1.4
576,646 + OHPLBJKB_00564 0.78 -0.3
576,647 - OHPLBJKB_00564 0.78 -1.0
576,647 - OHPLBJKB_00564 0.78 -1.1
576,764 + -0.1
576,811 + +0.0
576,811 + +0.5
576,811 + -1.3
576,812 - +1.0
576,812 - -0.3
576,815 + -0.8
576,825 - -0.8
576,833 + +0.9
576,833 + +0.4
576,834 - +0.4
576,847 + +1.3
576,848 - +0.4
576,848 - -0.6
576,870 + +2.2
576,871 - -0.3
576,923 + +0.4
576,967 + OHPLBJKB_00565 0.10 -0.1
576,968 - OHPLBJKB_00565 0.11 -0.6
576,968 - OHPLBJKB_00565 0.11 +1.0
577,028 + OHPLBJKB_00565 0.16 +2.0
577,028 + OHPLBJKB_00565 0.16 +0.7
577,028 + OHPLBJKB_00565 0.16 +0.5
577,028 + OHPLBJKB_00565 0.16 +0.3
577,028 + OHPLBJKB_00565 0.16 -0.3
577,028 + OHPLBJKB_00565 0.16 +0.5
577,028 + OHPLBJKB_00565 0.16 -1.4
577,029 - OHPLBJKB_00565 0.16 -1.7
577,029 - OHPLBJKB_00565 0.16 -1.6
577,029 - OHPLBJKB_00565 0.16 -0.9
577,029 - OHPLBJKB_00565 0.16 -0.1
577,029 - OHPLBJKB_00565 0.16 -0.1
577,029 - OHPLBJKB_00565 0.16 +0.0
577,029 - OHPLBJKB_00565 0.16 +0.4
577,129 + OHPLBJKB_00565 0.25 -0.4
577,130 - OHPLBJKB_00565 0.25 -0.7
577,130 - OHPLBJKB_00565 0.25 +1.2
577,141 + OHPLBJKB_00565 0.26 +1.4
577,161 + OHPLBJKB_00565 0.27 -0.3
577,161 + OHPLBJKB_00565 0.27 -1.3
577,162 - OHPLBJKB_00565 0.27 -0.7
577,162 - OHPLBJKB_00565 0.27 -0.8
577,229 - OHPLBJKB_00565 0.33 +1.0
577,229 - OHPLBJKB_00565 0.33 +0.7
577,296 + OHPLBJKB_00565 0.39 +6.3
577,297 - OHPLBJKB_00565 0.39 -0.6
577,708 + OHPLBJKB_00565 0.75 -0.0
577,767 - OHPLBJKB_00565 0.80 +0.6

Or see this region's nucleotide sequence