Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00496

Experiment: HSDP5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00494 and OHPLBJKB_00495 overlap by 4 nucleotidesOHPLBJKB_00495 and OHPLBJKB_00496 are separated by 45 nucleotidesOHPLBJKB_00496 and OHPLBJKB_00497 are separated by 117 nucleotidesOHPLBJKB_00497 and OHPLBJKB_00498 are separated by 22 nucleotides OHPLBJKB_00494: OHPLBJKB_00494 - Phosphocarrier protein NPr, at 511,736 to 512,008 _00494 OHPLBJKB_00495: OHPLBJKB_00495 - RNase adapter protein RapZ, at 512,005 to 512,859 _00495 OHPLBJKB_00496: OHPLBJKB_00496 - Nitrogen regulatory protein, at 512,905 to 513,396 _00496 OHPLBJKB_00497: OHPLBJKB_00497 - Ribosome hibernation promoting factor, at 513,514 to 513,801 _00497 OHPLBJKB_00498: OHPLBJKB_00498 - RNA polymerase sigma-54 factor, at 513,824 to 515,257 _00498 Position (kb) 512 513 514Strain fitness (log2 ratio) -2 -1 0 1 2 3at 511.932 kb on - strand, within OHPLBJKB_00494at 511.932 kb on - strand, within OHPLBJKB_00494at 511.932 kb on - strand, within OHPLBJKB_00494at 512.014 kb on - strandat 512.028 kb on + strandat 512.028 kb on + strandat 512.069 kb on + strandat 512.069 kb on + strandat 512.069 kb on + strandat 512.069 kb on + strandat 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.118 kb on + strand, within OHPLBJKB_00495at 512.141 kb on + strand, within OHPLBJKB_00495at 512.145 kb on + strand, within OHPLBJKB_00495at 512.145 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.171 kb on - strand, within OHPLBJKB_00495at 512.171 kb on - strand, within OHPLBJKB_00495at 512.176 kb on + strand, within OHPLBJKB_00495at 512.177 kb on - strand, within OHPLBJKB_00495at 512.186 kb on + strand, within OHPLBJKB_00495at 512.186 kb on + strand, within OHPLBJKB_00495at 512.187 kb on - strand, within OHPLBJKB_00495at 512.206 kb on - strand, within OHPLBJKB_00495at 512.215 kb on + strand, within OHPLBJKB_00495at 512.216 kb on - strand, within OHPLBJKB_00495at 512.253 kb on + strand, within OHPLBJKB_00495at 512.324 kb on + strand, within OHPLBJKB_00495at 512.324 kb on + strand, within OHPLBJKB_00495at 512.324 kb on + strand, within OHPLBJKB_00495at 512.325 kb on - strand, within OHPLBJKB_00495at 512.573 kb on + strand, within OHPLBJKB_00495at 512.584 kb on + strand, within OHPLBJKB_00495at 512.585 kb on - strand, within OHPLBJKB_00495at 512.585 kb on - strand, within OHPLBJKB_00495at 512.589 kb on + strand, within OHPLBJKB_00495at 512.590 kb on - strand, within OHPLBJKB_00495at 512.590 kb on - strand, within OHPLBJKB_00495at 512.590 kb on - strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.615 kb on - strand, within OHPLBJKB_00495at 512.615 kb on - strand, within OHPLBJKB_00495at 512.615 kb on - strand, within OHPLBJKB_00495at 512.644 kb on - strand, within OHPLBJKB_00495at 512.682 kb on + strand, within OHPLBJKB_00495at 512.682 kb on + strand, within OHPLBJKB_00495at 512.685 kb on + strand, within OHPLBJKB_00495at 512.685 kb on + strand, within OHPLBJKB_00495at 512.685 kb on + strand, within OHPLBJKB_00495at 512.686 kb on - strand, within OHPLBJKB_00495at 512.781 kb on - strandat 512.781 kb on - strandat 512.855 kb on - strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.903 kb on - strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.907 kb on - strandat 512.907 kb on - strandat 512.907 kb on - strandat 512.907 kb on - strandat 512.923 kb on - strandat 512.948 kb on + strandat 512.948 kb on + strandat 513.030 kb on + strand, within OHPLBJKB_00496at 513.030 kb on + strand, within OHPLBJKB_00496at 513.030 kb on + strand, within OHPLBJKB_00496at 513.031 kb on - strand, within OHPLBJKB_00496at 513.116 kb on - strand, within OHPLBJKB_00496at 513.116 kb on - strand, within OHPLBJKB_00496at 513.159 kb on + strand, within OHPLBJKB_00496at 513.159 kb on + strand, within OHPLBJKB_00496at 513.193 kb on - strand, within OHPLBJKB_00496at 513.267 kb on + strand, within OHPLBJKB_00496at 513.268 kb on - strand, within OHPLBJKB_00496at 513.343 kb on - strand, within OHPLBJKB_00496at 513.343 kb on - strand, within OHPLBJKB_00496at 513.354 kb on + strandat 513.366 kb on + strandat 513.367 kb on - strandat 513.367 kb on - strandat 513.374 kb on - strandat 513.382 kb on - strandat 513.382 kb on - strandat 513.382 kb on - strandat 513.387 kb on + strandat 513.387 kb on + strandat 513.388 kb on - strandat 513.499 kb on + strandat 513.499 kb on + strandat 513.499 kb on + strandat 513.500 kb on - strandat 513.515 kb on + strandat 513.516 kb on - strandat 513.516 kb on - strandat 513.531 kb on + strandat 513.538 kb on - strandat 513.538 kb on - strandat 513.538 kb on - strandat 513.571 kb on + strand, within OHPLBJKB_00497at 513.590 kb on + strand, within OHPLBJKB_00497at 513.590 kb on + strand, within OHPLBJKB_00497at 513.590 kb on + strand, within OHPLBJKB_00497at 513.590 kb on + strand, within OHPLBJKB_00497at 513.590 kb on + strand, within OHPLBJKB_00497at 513.590 kb on + strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.591 kb on - strand, within OHPLBJKB_00497at 513.634 kb on + strand, within OHPLBJKB_00497at 513.634 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.689 kb on + strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.690 kb on - strand, within OHPLBJKB_00497at 513.713 kb on + strand, within OHPLBJKB_00497at 513.777 kb on + strandat 513.801 kb on + strandat 513.801 kb on + strandat 513.801 kb on + strandat 513.801 kb on + strandat 513.802 kb on - strandat 513.802 kb on - strandat 513.802 kb on - strandat 514.056 kb on + strand, within OHPLBJKB_00498at 514.093 kb on - strand, within OHPLBJKB_00498

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
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511,932 - OHPLBJKB_00494 0.72 +0.5
511,932 - OHPLBJKB_00494 0.72 +0.0
511,932 - OHPLBJKB_00494 0.72 -0.5
512,014 - -0.9
512,028 + +1.0
512,028 + -0.7
512,069 + +0.0
512,069 + +0.3
512,069 + +1.9
512,069 + -1.3
512,093 + OHPLBJKB_00495 0.10 -0.7
512,093 + OHPLBJKB_00495 0.10 -1.3
512,093 + OHPLBJKB_00495 0.10 -0.5
512,093 + OHPLBJKB_00495 0.10 -0.8
512,093 + OHPLBJKB_00495 0.10 -0.8
512,093 + OHPLBJKB_00495 0.10 +1.5
512,093 + OHPLBJKB_00495 0.10 -1.0
512,093 + OHPLBJKB_00495 0.10 -0.5
512,093 + OHPLBJKB_00495 0.10 -2.0
512,094 - OHPLBJKB_00495 0.10 -0.3
512,094 - OHPLBJKB_00495 0.10 -0.5
512,094 - OHPLBJKB_00495 0.10 +1.0
512,094 - OHPLBJKB_00495 0.10 +1.0
512,094 - OHPLBJKB_00495 0.10 -1.5
512,094 - OHPLBJKB_00495 0.10 -2.0
512,118 + OHPLBJKB_00495 0.13 +0.5
512,141 + OHPLBJKB_00495 0.16 +0.1
512,145 + OHPLBJKB_00495 0.16 -0.1
512,145 + OHPLBJKB_00495 0.16 +0.5
512,166 + OHPLBJKB_00495 0.19 -1.7
512,166 + OHPLBJKB_00495 0.19 -1.1
512,166 + OHPLBJKB_00495 0.19 -0.4
512,166 + OHPLBJKB_00495 0.19 -0.3
512,166 + OHPLBJKB_00495 0.19 +1.0
512,166 + OHPLBJKB_00495 0.19 -0.7
512,167 - OHPLBJKB_00495 0.19 -0.8
512,167 - OHPLBJKB_00495 0.19 +0.6
512,167 - OHPLBJKB_00495 0.19 -0.8
512,167 - OHPLBJKB_00495 0.19 -1.0
512,171 - OHPLBJKB_00495 0.19 -0.7
512,171 - OHPLBJKB_00495 0.19 -0.5
512,176 + OHPLBJKB_00495 0.20 +0.2
512,177 - OHPLBJKB_00495 0.20 -0.2
512,186 + OHPLBJKB_00495 0.21 -1.4
512,186 + OHPLBJKB_00495 0.21 +1.5
512,187 - OHPLBJKB_00495 0.21 +2.0
512,206 - OHPLBJKB_00495 0.24 +0.3
512,215 + OHPLBJKB_00495 0.25 -0.2
512,216 - OHPLBJKB_00495 0.25 -0.7
512,253 + OHPLBJKB_00495 0.29 +0.0
512,324 + OHPLBJKB_00495 0.37 -2.0
512,324 + OHPLBJKB_00495 0.37 -1.0
512,324 + OHPLBJKB_00495 0.37 +1.2
512,325 - OHPLBJKB_00495 0.37 -1.4
512,573 + OHPLBJKB_00495 0.66 +0.0
512,584 + OHPLBJKB_00495 0.68 +0.5
512,585 - OHPLBJKB_00495 0.68 +0.5
512,585 - OHPLBJKB_00495 0.68 +3.0
512,589 + OHPLBJKB_00495 0.68 -0.8
512,590 - OHPLBJKB_00495 0.68 -1.0
512,590 - OHPLBJKB_00495 0.68 +1.4
512,590 - OHPLBJKB_00495 0.68 -1.1
512,614 + OHPLBJKB_00495 0.71 -1.3
512,614 + OHPLBJKB_00495 0.71 +1.0
512,614 + OHPLBJKB_00495 0.71 -0.8
512,614 + OHPLBJKB_00495 0.71 -0.8
512,614 + OHPLBJKB_00495 0.71 +0.5
512,615 - OHPLBJKB_00495 0.71 +0.6
512,615 - OHPLBJKB_00495 0.71 +1.0
512,615 - OHPLBJKB_00495 0.71 -1.1
512,644 - OHPLBJKB_00495 0.75 +0.2
512,682 + OHPLBJKB_00495 0.79 +0.6
512,682 + OHPLBJKB_00495 0.79 -0.3
512,685 + OHPLBJKB_00495 0.80 +0.5
512,685 + OHPLBJKB_00495 0.80 +0.0
512,685 + OHPLBJKB_00495 0.80 -1.3
512,686 - OHPLBJKB_00495 0.80 -0.1
512,781 - +0.6
512,781 - -0.5
512,855 - -0.5
512,861 + +2.0
512,861 + -0.3
512,861 + -0.7
512,861 + +1.0
512,861 + -1.0
512,862 - -0.5
512,862 - -0.4
512,862 - +0.6
512,862 - -0.7
512,862 - +1.0
512,862 - +0.0
512,862 - -1.8
512,903 - +0.2
512,906 + +1.0
512,906 + +0.8
512,906 + +0.6
512,906 + -0.7
512,906 + -0.9
512,906 + +1.0
512,907 - +0.4
512,907 - -0.2
512,907 - -0.2
512,907 - -0.3
512,923 - +0.8
512,948 + +1.0
512,948 + +0.7
513,030 + OHPLBJKB_00496 0.25 +1.3
513,030 + OHPLBJKB_00496 0.25 -1.0
513,030 + OHPLBJKB_00496 0.25 +0.0
513,031 - OHPLBJKB_00496 0.26 +0.8
513,116 - OHPLBJKB_00496 0.43 -1.3
513,116 - OHPLBJKB_00496 0.43 +0.0
513,159 + OHPLBJKB_00496 0.52 -1.1
513,159 + OHPLBJKB_00496 0.52 -1.3
513,193 - OHPLBJKB_00496 0.59 -0.8
513,267 + OHPLBJKB_00496 0.74 +2.0
513,268 - OHPLBJKB_00496 0.74 -1.1
513,343 - OHPLBJKB_00496 0.89 +0.2
513,343 - OHPLBJKB_00496 0.89 -1.1
513,354 + -1.9
513,366 + +1.0
513,367 - +1.0
513,367 - -1.0
513,374 - -0.3
513,382 - +0.5
513,382 - +0.2
513,382 - -1.0
513,387 + -0.8
513,387 + -0.3
513,388 - +0.1
513,499 + -0.8
513,499 + +0.0
513,499 + +0.2
513,500 - -0.2
513,515 + +0.0
513,516 - +0.2
513,516 - +0.7
513,531 + -1.3
513,538 - +0.9
513,538 - -0.1
513,538 - +0.6
513,571 + OHPLBJKB_00497 0.20 +1.0
513,590 + OHPLBJKB_00497 0.26 -1.0
513,590 + OHPLBJKB_00497 0.26 -1.3
513,590 + OHPLBJKB_00497 0.26 +0.2
513,590 + OHPLBJKB_00497 0.26 +0.2
513,590 + OHPLBJKB_00497 0.26 -0.8
513,590 + OHPLBJKB_00497 0.26 +0.6
513,591 - OHPLBJKB_00497 0.27 -0.8
513,591 - OHPLBJKB_00497 0.27 -1.1
513,591 - OHPLBJKB_00497 0.27 -1.8
513,591 - OHPLBJKB_00497 0.27 +0.3
513,591 - OHPLBJKB_00497 0.27 +0.7
513,591 - OHPLBJKB_00497 0.27 -1.1
513,591 - OHPLBJKB_00497 0.27 -0.4
513,591 - OHPLBJKB_00497 0.27 +0.6
513,591 - OHPLBJKB_00497 0.27 +0.2
513,591 - OHPLBJKB_00497 0.27 -0.5
513,591 - OHPLBJKB_00497 0.27 -0.8
513,591 - OHPLBJKB_00497 0.27 -0.2
513,634 + OHPLBJKB_00497 0.42 +1.0
513,634 + OHPLBJKB_00497 0.42 -0.8
513,689 + OHPLBJKB_00497 0.61 -1.0
513,689 + OHPLBJKB_00497 0.61 -0.8
513,689 + OHPLBJKB_00497 0.61 -0.5
513,689 + OHPLBJKB_00497 0.61 -1.1
513,689 + OHPLBJKB_00497 0.61 +0.5
513,689 + OHPLBJKB_00497 0.61 -1.4
513,689 + OHPLBJKB_00497 0.61 +0.0
513,689 + OHPLBJKB_00497 0.61 -0.3
513,689 + OHPLBJKB_00497 0.61 -2.1
513,690 - OHPLBJKB_00497 0.61 +0.8
513,690 - OHPLBJKB_00497 0.61 +0.5
513,690 - OHPLBJKB_00497 0.61 +0.2
513,690 - OHPLBJKB_00497 0.61 -0.8
513,690 - OHPLBJKB_00497 0.61 -1.0
513,690 - OHPLBJKB_00497 0.61 -0.8
513,690 - OHPLBJKB_00497 0.61 +0.7
513,690 - OHPLBJKB_00497 0.61 -0.4
513,690 - OHPLBJKB_00497 0.61 +0.2
513,690 - OHPLBJKB_00497 0.61 -0.4
513,713 + OHPLBJKB_00497 0.69 -0.5
513,777 + -0.3
513,801 + +0.2
513,801 + +0.3
513,801 + -0.5
513,801 + -0.3
513,802 - +0.7
513,802 - -0.3
513,802 - +1.0
514,056 + OHPLBJKB_00498 0.16 +1.0
514,093 - OHPLBJKB_00498 0.19 +1.0

Or see this region's nucleotide sequence