Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00489

Experiment: HSDP5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00488 and OHPLBJKB_00489 are separated by 581 nucleotidesOHPLBJKB_00489 and OHPLBJKB_00490 are separated by 95 nucleotides OHPLBJKB_00488: OHPLBJKB_00488 - Glutamate synthase [NADPH] large chain, at 500,789 to 505,342 _00488 OHPLBJKB_00489: OHPLBJKB_00489 - hypothetical protein, at 505,924 to 506,853 _00489 OHPLBJKB_00490: OHPLBJKB_00490 - Aerobic respiration control sensor protein ArcB, at 506,949 to 509,285 _00490 Position (kb) 505 506 507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 505.102 kb on + strandat 505.151 kb on + strandat 505.151 kb on + strandat 505.166 kb on + strandat 505.166 kb on + strandat 505.167 kb on - strandat 505.190 kb on + strandat 505.190 kb on + strandat 505.190 kb on + strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.220 kb on - strandat 505.242 kb on + strandat 505.242 kb on + strandat 505.243 kb on - strandat 505.249 kb on + strandat 505.250 kb on - strandat 505.250 kb on - strandat 505.343 kb on - strandat 505.426 kb on - strandat 505.683 kb on - strandat 505.780 kb on + strandat 505.916 kb on - strandat 505.923 kb on + strandat 505.931 kb on + strandat 505.931 kb on + strandat 505.941 kb on - strandat 505.941 kb on - strandat 505.947 kb on + strandat 505.947 kb on + strandat 505.947 kb on + strandat 505.948 kb on - strandat 505.948 kb on - strandat 505.992 kb on + strandat 505.992 kb on + strandat 505.992 kb on + strandat 505.993 kb on - strandat 505.993 kb on - strandat 506.017 kb on - strand, within OHPLBJKB_00489at 506.141 kb on + strand, within OHPLBJKB_00489at 506.141 kb on + strand, within OHPLBJKB_00489at 506.142 kb on - strand, within OHPLBJKB_00489at 506.142 kb on - strand, within OHPLBJKB_00489at 506.171 kb on - strand, within OHPLBJKB_00489at 506.182 kb on + strand, within OHPLBJKB_00489at 506.183 kb on - strand, within OHPLBJKB_00489at 506.184 kb on + strand, within OHPLBJKB_00489at 506.220 kb on + strand, within OHPLBJKB_00489at 506.220 kb on + strand, within OHPLBJKB_00489at 506.220 kb on + strand, within OHPLBJKB_00489at 506.220 kb on + strand, within OHPLBJKB_00489at 506.220 kb on + strand, within OHPLBJKB_00489at 506.220 kb on + strand, within OHPLBJKB_00489at 506.220 kb on + strand, within OHPLBJKB_00489at 506.221 kb on - strand, within OHPLBJKB_00489at 506.221 kb on - strand, within OHPLBJKB_00489at 506.221 kb on - strand, within OHPLBJKB_00489at 506.224 kb on + strand, within OHPLBJKB_00489at 506.225 kb on - strand, within OHPLBJKB_00489at 506.225 kb on - strand, within OHPLBJKB_00489at 506.225 kb on - strand, within OHPLBJKB_00489at 506.250 kb on + strand, within OHPLBJKB_00489at 506.251 kb on - strand, within OHPLBJKB_00489at 506.320 kb on + strand, within OHPLBJKB_00489at 506.321 kb on - strand, within OHPLBJKB_00489at 506.321 kb on - strand, within OHPLBJKB_00489at 506.322 kb on + strand, within OHPLBJKB_00489at 506.322 kb on + strand, within OHPLBJKB_00489at 506.322 kb on + strand, within OHPLBJKB_00489at 506.322 kb on + strand, within OHPLBJKB_00489at 506.322 kb on + strand, within OHPLBJKB_00489at 506.322 kb on + strand, within OHPLBJKB_00489at 506.323 kb on - strand, within OHPLBJKB_00489at 506.323 kb on - strand, within OHPLBJKB_00489at 506.323 kb on - strand, within OHPLBJKB_00489at 506.323 kb on - strand, within OHPLBJKB_00489at 506.427 kb on + strand, within OHPLBJKB_00489at 506.428 kb on - strand, within OHPLBJKB_00489at 506.474 kb on + strand, within OHPLBJKB_00489at 506.474 kb on + strand, within OHPLBJKB_00489at 506.474 kb on + strand, within OHPLBJKB_00489at 506.474 kb on + strand, within OHPLBJKB_00489at 506.475 kb on - strand, within OHPLBJKB_00489at 506.475 kb on - strand, within OHPLBJKB_00489at 506.644 kb on + strand, within OHPLBJKB_00489at 506.644 kb on + strand, within OHPLBJKB_00489at 506.645 kb on - strand, within OHPLBJKB_00489at 506.677 kb on - strand, within OHPLBJKB_00489at 506.695 kb on + strand, within OHPLBJKB_00489at 506.696 kb on - strand, within OHPLBJKB_00489at 506.696 kb on - strand, within OHPLBJKB_00489at 506.789 kb on - strandat 506.808 kb on - strandat 506.852 kb on - strandat 506.889 kb on + strandat 506.889 kb on + strandat 506.896 kb on + strandat 506.896 kb on + strandat 506.896 kb on + strandat 506.896 kb on + strandat 506.897 kb on - strandat 506.897 kb on - strandat 506.897 kb on - strandat 506.897 kb on - strandat 506.897 kb on - strandat 506.897 kb on - strandat 506.914 kb on - strandat 506.976 kb on + strandat 506.979 kb on + strandat 506.979 kb on + strandat 506.979 kb on + strandat 506.979 kb on + strandat 506.979 kb on + strandat 506.979 kb on + strandat 506.979 kb on + strandat 507.001 kb on + strandat 507.123 kb on - strandat 507.144 kb on - strandat 507.159 kb on + strandat 507.160 kb on - strandat 507.278 kb on + strand, within OHPLBJKB_00490at 507.282 kb on - strand, within OHPLBJKB_00490at 507.418 kb on + strand, within OHPLBJKB_00490at 507.419 kb on - strand, within OHPLBJKB_00490at 507.419 kb on - strand, within OHPLBJKB_00490at 507.755 kb on + strand, within OHPLBJKB_00490at 507.755 kb on + strand, within OHPLBJKB_00490at 507.806 kb on + strand, within OHPLBJKB_00490at 507.806 kb on + strand, within OHPLBJKB_00490

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
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505,102 + -0.2
505,151 + -0.2
505,151 + -0.6
505,166 + +0.2
505,166 + -0.5
505,167 - -1.4
505,190 + -0.9
505,190 + +0.1
505,190 + -0.4
505,191 - -0.5
505,191 - +0.4
505,191 - +0.1
505,191 - +1.0
505,191 - +0.1
505,191 - -0.3
505,191 - -0.2
505,191 - -0.3
505,220 - +0.1
505,242 + -0.3
505,242 + -0.6
505,243 - -1.9
505,249 + -1.5
505,250 - +0.1
505,250 - +0.2
505,343 - +0.1
505,426 - +0.5
505,683 - -0.4
505,780 + -1.2
505,916 - -0.8
505,923 + +0.1
505,931 + -0.0
505,931 + -0.5
505,941 - -1.5
505,941 - +0.1
505,947 + -0.8
505,947 + +1.1
505,947 + +1.1
505,948 - +1.6
505,948 - +0.3
505,992 + -0.3
505,992 + +1.4
505,992 + +0.1
505,993 - -0.5
505,993 - +0.4
506,017 - OHPLBJKB_00489 0.10 -1.3
506,141 + OHPLBJKB_00489 0.23 -0.8
506,141 + OHPLBJKB_00489 0.23 +0.1
506,142 - OHPLBJKB_00489 0.23 -1.6
506,142 - OHPLBJKB_00489 0.23 +0.2
506,171 - OHPLBJKB_00489 0.27 +2.5
506,182 + OHPLBJKB_00489 0.28 +1.7
506,183 - OHPLBJKB_00489 0.28 -0.0
506,184 + OHPLBJKB_00489 0.28 +0.4
506,220 + OHPLBJKB_00489 0.32 +0.7
506,220 + OHPLBJKB_00489 0.32 -0.8
506,220 + OHPLBJKB_00489 0.32 +0.4
506,220 + OHPLBJKB_00489 0.32 -1.1
506,220 + OHPLBJKB_00489 0.32 +0.5
506,220 + OHPLBJKB_00489 0.32 +0.7
506,220 + OHPLBJKB_00489 0.32 -0.2
506,221 - OHPLBJKB_00489 0.32 +0.1
506,221 - OHPLBJKB_00489 0.32 -0.2
506,221 - OHPLBJKB_00489 0.32 -0.1
506,224 + OHPLBJKB_00489 0.32 -0.4
506,225 - OHPLBJKB_00489 0.32 +0.1
506,225 - OHPLBJKB_00489 0.32 +1.1
506,225 - OHPLBJKB_00489 0.32 -1.6
506,250 + OHPLBJKB_00489 0.35 +1.1
506,251 - OHPLBJKB_00489 0.35 +0.6
506,320 + OHPLBJKB_00489 0.43 +0.1
506,321 - OHPLBJKB_00489 0.43 +0.1
506,321 - OHPLBJKB_00489 0.43 -0.1
506,322 + OHPLBJKB_00489 0.43 +0.5
506,322 + OHPLBJKB_00489 0.43 +0.1
506,322 + OHPLBJKB_00489 0.43 -0.1
506,322 + OHPLBJKB_00489 0.43 -0.8
506,322 + OHPLBJKB_00489 0.43 +1.3
506,322 + OHPLBJKB_00489 0.43 +1.2
506,323 - OHPLBJKB_00489 0.43 +0.6
506,323 - OHPLBJKB_00489 0.43 -0.3
506,323 - OHPLBJKB_00489 0.43 +0.6
506,323 - OHPLBJKB_00489 0.43 +1.6
506,427 + OHPLBJKB_00489 0.54 -0.2
506,428 - OHPLBJKB_00489 0.54 +0.1
506,474 + OHPLBJKB_00489 0.59 +0.4
506,474 + OHPLBJKB_00489 0.59 -0.2
506,474 + OHPLBJKB_00489 0.59 -0.4
506,474 + OHPLBJKB_00489 0.59 -0.1
506,475 - OHPLBJKB_00489 0.59 -0.1
506,475 - OHPLBJKB_00489 0.59 -3.3
506,644 + OHPLBJKB_00489 0.77 -1.9
506,644 + OHPLBJKB_00489 0.77 -1.4
506,645 - OHPLBJKB_00489 0.78 +0.3
506,677 - OHPLBJKB_00489 0.81 +0.5
506,695 + OHPLBJKB_00489 0.83 +0.9
506,696 - OHPLBJKB_00489 0.83 +5.8
506,696 - OHPLBJKB_00489 0.83 -0.9
506,789 - +0.1
506,808 - +0.2
506,852 - -0.5
506,889 + +0.1
506,889 + +0.8
506,896 + +0.3
506,896 + -0.9
506,896 + +0.2
506,896 + +0.1
506,897 - +0.3
506,897 - +0.7
506,897 - +0.4
506,897 - +0.2
506,897 - -1.1
506,897 - +0.6
506,914 - +0.3
506,976 + -1.4
506,979 + -0.5
506,979 + -1.0
506,979 + +0.2
506,979 + +0.5
506,979 + -0.3
506,979 + -0.3
506,979 + +2.5
507,001 + -0.3
507,123 - +0.5
507,144 - +0.1
507,159 + -0.5
507,160 - -1.1
507,278 + OHPLBJKB_00490 0.14 +0.2
507,282 - OHPLBJKB_00490 0.14 +0.5
507,418 + OHPLBJKB_00490 0.20 +1.1
507,419 - OHPLBJKB_00490 0.20 -0.9
507,419 - OHPLBJKB_00490 0.20 +2.1
507,755 + OHPLBJKB_00490 0.34 +0.1
507,755 + OHPLBJKB_00490 0.34 +0.5
507,806 + OHPLBJKB_00490 0.37 +1.6
507,806 + OHPLBJKB_00490 0.37 -0.6

Or see this region's nucleotide sequence