Experiment: HSDP5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00455 and OHPLBJKB_00456 overlap by 1 nucleotides OHPLBJKB_00456 and OHPLBJKB_00457 are separated by 8 nucleotides OHPLBJKB_00457 and OHPLBJKB_00458 overlap by 11 nucleotides
OHPLBJKB_00455: OHPLBJKB_00455 - Cell shape-determining protein MreC, at 467,335 to 468,438
_00455
OHPLBJKB_00456: OHPLBJKB_00456 - Rod shape-determining protein MreD, at 468,438 to 468,926
_00456
OHPLBJKB_00457: OHPLBJKB_00457 - Maf-like protein YhdE, at 468,935 to 469,528
_00457
OHPLBJKB_00458: OHPLBJKB_00458 - Ribonuclease G, at 469,518 to 470,987
_00458
Position (kb) 468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2 at 468.934 kb on + strand at 468.935 kb on - strand at 468.947 kb on + strand at 468.951 kb on + strand at 468.951 kb on + strand at 468.952 kb on - strand at 468.952 kb on - strand at 468.952 kb on - strand at 468.952 kb on - strand at 468.981 kb on + strand at 468.982 kb on - strand at 468.982 kb on - strand at 469.012 kb on + strand, within OHPLBJKB_00457 at 469.012 kb on + strand, within OHPLBJKB_00457 at 469.012 kb on + strand, within OHPLBJKB_00457 at 469.013 kb on - strand, within OHPLBJKB_00457 at 469.013 kb on - strand, within OHPLBJKB_00457 at 469.065 kb on - strand, within OHPLBJKB_00457 at 469.065 kb on - strand, within OHPLBJKB_00457 at 469.147 kb on + strand, within OHPLBJKB_00457 at 469.148 kb on - strand, within OHPLBJKB_00457 at 469.366 kb on - strand, within OHPLBJKB_00457 at 469.369 kb on + strand, within OHPLBJKB_00457 at 469.369 kb on + strand, within OHPLBJKB_00457 at 469.369 kb on + strand, within OHPLBJKB_00457 at 469.370 kb on - strand, within OHPLBJKB_00457 at 469.370 kb on - strand, within OHPLBJKB_00457 at 469.423 kb on - strand, within OHPLBJKB_00457 at 469.434 kb on - strand, within OHPLBJKB_00457 at 469.469 kb on + strand at 469.469 kb on + strand at 469.476 kb on + strand at 469.534 kb on + strand at 469.537 kb on + strand at 469.537 kb on + strand at 469.569 kb on + strand at 469.569 kb on + strand at 469.570 kb on - strand at 469.570 kb on - strand at 469.571 kb on + strand at 469.572 kb on - strand at 469.583 kb on + strand at 469.630 kb on + strand at 469.631 kb on - strand at 469.631 kb on - strand at 469.631 kb on - strand at 469.631 kb on - strand at 469.638 kb on - strand at 469.641 kb on + strand at 469.641 kb on + strand at 469.641 kb on + strand at 469.641 kb on + strand at 469.642 kb on - strand at 469.642 kb on - strand at 469.642 kb on - strand at 469.642 kb on - strand at 469.642 kb on - strand at 469.655 kb on - strand at 469.655 kb on - strand at 469.663 kb on + strand at 469.664 kb on - strand at 469.690 kb on + strand, within OHPLBJKB_00458 at 469.694 kb on + strand, within OHPLBJKB_00458 at 469.914 kb on - strand, within OHPLBJKB_00458 at 469.950 kb on - strand, within OHPLBJKB_00458 at 469.950 kb on - strand, within OHPLBJKB_00458 at 470.021 kb on + strand, within OHPLBJKB_00458 at 470.106 kb on - strand, within OHPLBJKB_00458 at 470.232 kb on + strand, within OHPLBJKB_00458 at 470.232 kb on + strand, within OHPLBJKB_00458 at 470.243 kb on - strand, within OHPLBJKB_00458 at 470.295 kb on + strand, within OHPLBJKB_00458 at 470.295 kb on + strand, within OHPLBJKB_00458 at 470.295 kb on + strand, within OHPLBJKB_00458 at 470.296 kb on - strand, within OHPLBJKB_00458 at 470.368 kb on + strand, within OHPLBJKB_00458 at 470.369 kb on - strand, within OHPLBJKB_00458 at 470.369 kb on - strand, within OHPLBJKB_00458 at 470.388 kb on + strand, within OHPLBJKB_00458 at 470.388 kb on + strand, within OHPLBJKB_00458 at 470.490 kb on - strand, within OHPLBJKB_00458
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP5 remove 468,934 + +0.1 468,935 - -1.2 468,947 + -0.4 468,951 + +0.8 468,951 + -1.8 468,952 - -1.1 468,952 - -1.7 468,952 - -0.3 468,952 - -0.6 468,981 + -0.1 468,982 - -0.9 468,982 - -0.6 469,012 + OHPLBJKB_00457 0.13 +0.3 469,012 + OHPLBJKB_00457 0.13 -0.5 469,012 + OHPLBJKB_00457 0.13 -0.1 469,013 - OHPLBJKB_00457 0.13 +0.5 469,013 - OHPLBJKB_00457 0.13 +1.8 469,065 - OHPLBJKB_00457 0.22 -0.5 469,065 - OHPLBJKB_00457 0.22 -1.1 469,147 + OHPLBJKB_00457 0.36 +1.1 469,148 - OHPLBJKB_00457 0.36 -0.7 469,366 - OHPLBJKB_00457 0.73 -0.9 469,369 + OHPLBJKB_00457 0.73 +0.4 469,369 + OHPLBJKB_00457 0.73 -0.4 469,369 + OHPLBJKB_00457 0.73 +0.7 469,370 - OHPLBJKB_00457 0.73 -1.6 469,370 - OHPLBJKB_00457 0.73 +0.7 469,423 - OHPLBJKB_00457 0.82 +0.4 469,434 - OHPLBJKB_00457 0.84 +0.4 469,469 + -0.4 469,469 + -0.3 469,476 + -0.6 469,534 + -0.4 469,537 + -0.5 469,537 + -1.4 469,569 + -0.7 469,569 + -1.2 469,570 - +0.5 469,570 - +0.7 469,571 + +0.5 469,572 - -1.7 469,583 + -1.4 469,630 + -0.8 469,631 - -2.1 469,631 - +0.6 469,631 - -0.2 469,631 - -1.3 469,638 - -0.6 469,641 + -0.3 469,641 + +0.1 469,641 + +1.6 469,641 + -1.1 469,642 - +0.1 469,642 - -0.5 469,642 - +0.1 469,642 - +0.8 469,642 - +0.1 469,655 - +1.3 469,655 - +0.4 469,663 + -0.4 469,664 - -0.7 469,690 + OHPLBJKB_00458 0.12 -1.5 469,694 + OHPLBJKB_00458 0.12 -1.1 469,914 - OHPLBJKB_00458 0.27 -0.9 469,950 - OHPLBJKB_00458 0.29 -0.4 469,950 - OHPLBJKB_00458 0.29 -0.1 470,021 + OHPLBJKB_00458 0.34 -1.1 470,106 - OHPLBJKB_00458 0.40 -0.1 470,232 + OHPLBJKB_00458 0.49 -0.5 470,232 + OHPLBJKB_00458 0.49 -1.3 470,243 - OHPLBJKB_00458 0.49 +0.8 470,295 + OHPLBJKB_00458 0.53 -0.3 470,295 + OHPLBJKB_00458 0.53 -0.1 470,295 + OHPLBJKB_00458 0.53 +0.3 470,296 - OHPLBJKB_00458 0.53 -0.9 470,368 + OHPLBJKB_00458 0.58 +0.3 470,369 - OHPLBJKB_00458 0.58 -0.7 470,369 - OHPLBJKB_00458 0.58 -0.8 470,388 + OHPLBJKB_00458 0.59 -0.6 470,388 + OHPLBJKB_00458 0.59 +0.4 470,490 - OHPLBJKB_00458 0.66 -1.6
Or see this region's nucleotide sequence