Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00184

Experiment: HSDP5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00183 and OHPLBJKB_00184 are separated by 404 nucleotidesOHPLBJKB_00184 and OHPLBJKB_00185 are separated by 210 nucleotides OHPLBJKB_00183: OHPLBJKB_00183 - Cytoplasmic trehalase, at 198,348 to 199,997 _00183 OHPLBJKB_00184: OHPLBJKB_00184 - hypothetical protein, at 200,402 to 201,799 _00184 OHPLBJKB_00185: OHPLBJKB_00185 - Glutamate decarboxylase alpha, at 202,010 to 203,410 _00185 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1at 199.465 kb on + strand, within OHPLBJKB_00183at 199.465 kb on + strand, within OHPLBJKB_00183at 199.466 kb on - strand, within OHPLBJKB_00183at 199.466 kb on - strand, within OHPLBJKB_00183at 199.480 kb on + strand, within OHPLBJKB_00183at 199.480 kb on + strand, within OHPLBJKB_00183at 199.480 kb on + strand, within OHPLBJKB_00183at 199.481 kb on - strand, within OHPLBJKB_00183at 199.481 kb on - strand, within OHPLBJKB_00183at 199.481 kb on - strand, within OHPLBJKB_00183at 199.481 kb on - strand, within OHPLBJKB_00183at 199.490 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.511 kb on + strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.512 kb on - strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.513 kb on + strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.514 kb on - strand, within OHPLBJKB_00183at 199.626 kb on + strand, within OHPLBJKB_00183at 199.627 kb on - strand, within OHPLBJKB_00183at 199.630 kb on + strand, within OHPLBJKB_00183at 199.631 kb on - strand, within OHPLBJKB_00183at 199.713 kb on - strand, within OHPLBJKB_00183at 199.725 kb on + strand, within OHPLBJKB_00183at 199.772 kb on + strand, within OHPLBJKB_00183at 199.773 kb on - strand, within OHPLBJKB_00183at 199.773 kb on - strand, within OHPLBJKB_00183at 199.912 kb on - strandat 199.912 kb on - strandat 199.918 kb on + strandat 199.933 kb on + strandat 199.934 kb on - strandat 199.971 kb on - strandat 199.997 kb on + strandat 200.025 kb on + strandat 200.045 kb on - strandat 200.128 kb on + strandat 200.128 kb on + strandat 200.128 kb on + strandat 200.132 kb on - strandat 200.317 kb on - strandat 200.377 kb on - strandat 200.377 kb on - strandat 200.420 kb on - strandat 200.420 kb on - strandat 200.420 kb on - strandat 200.420 kb on - strandat 200.420 kb on - strandat 200.422 kb on + strandat 200.457 kb on - strandat 200.457 kb on - strandat 200.457 kb on - strandat 200.457 kb on - strandat 200.460 kb on + strandat 200.461 kb on - strandat 200.474 kb on + strandat 200.474 kb on + strandat 200.475 kb on - strandat 200.475 kb on - strandat 200.484 kb on - strandat 200.494 kb on + strandat 200.503 kb on + strandat 200.542 kb on + strand, within OHPLBJKB_00184at 200.543 kb on - strand, within OHPLBJKB_00184at 200.545 kb on + strand, within OHPLBJKB_00184at 200.607 kb on + strand, within OHPLBJKB_00184at 200.618 kb on + strand, within OHPLBJKB_00184at 200.618 kb on + strand, within OHPLBJKB_00184at 200.619 kb on - strand, within OHPLBJKB_00184at 200.619 kb on - strand, within OHPLBJKB_00184at 200.621 kb on + strand, within OHPLBJKB_00184at 200.621 kb on + strand, within OHPLBJKB_00184at 200.622 kb on - strand, within OHPLBJKB_00184at 200.623 kb on + strand, within OHPLBJKB_00184at 200.623 kb on + strand, within OHPLBJKB_00184at 200.652 kb on - strand, within OHPLBJKB_00184at 200.659 kb on + strand, within OHPLBJKB_00184at 200.659 kb on + strand, within OHPLBJKB_00184at 200.660 kb on - strand, within OHPLBJKB_00184at 200.660 kb on - strand, within OHPLBJKB_00184at 200.671 kb on + strand, within OHPLBJKB_00184at 200.671 kb on + strand, within OHPLBJKB_00184at 200.672 kb on - strand, within OHPLBJKB_00184at 200.672 kb on - strand, within OHPLBJKB_00184at 200.773 kb on + strand, within OHPLBJKB_00184at 200.773 kb on + strand, within OHPLBJKB_00184at 200.774 kb on - strand, within OHPLBJKB_00184at 200.774 kb on - strand, within OHPLBJKB_00184at 200.774 kb on - strand, within OHPLBJKB_00184at 200.774 kb on - strand, within OHPLBJKB_00184at 200.791 kb on + strand, within OHPLBJKB_00184at 200.791 kb on + strand, within OHPLBJKB_00184at 200.791 kb on + strand, within OHPLBJKB_00184at 200.792 kb on - strand, within OHPLBJKB_00184at 200.842 kb on - strand, within OHPLBJKB_00184at 200.890 kb on + strand, within OHPLBJKB_00184at 200.981 kb on + strand, within OHPLBJKB_00184at 200.982 kb on - strand, within OHPLBJKB_00184at 201.008 kb on - strand, within OHPLBJKB_00184at 201.008 kb on - strand, within OHPLBJKB_00184at 201.118 kb on - strand, within OHPLBJKB_00184at 201.121 kb on + strand, within OHPLBJKB_00184at 201.121 kb on + strand, within OHPLBJKB_00184at 201.121 kb on + strand, within OHPLBJKB_00184at 201.122 kb on - strand, within OHPLBJKB_00184at 201.133 kb on + strand, within OHPLBJKB_00184at 201.133 kb on + strand, within OHPLBJKB_00184at 201.238 kb on + strand, within OHPLBJKB_00184at 201.239 kb on - strand, within OHPLBJKB_00184at 201.245 kb on - strand, within OHPLBJKB_00184at 201.355 kb on + strand, within OHPLBJKB_00184at 201.376 kb on + strand, within OHPLBJKB_00184at 201.616 kb on + strand, within OHPLBJKB_00184at 201.638 kb on + strand, within OHPLBJKB_00184at 201.703 kb on - strandat 201.741 kb on + strandat 201.741 kb on + strandat 201.742 kb on - strandat 201.771 kb on - strandat 201.780 kb on - strandat 201.782 kb on - strandat 201.802 kb on - strandat 201.878 kb on - strandat 201.932 kb on + strandat 202.082 kb on - strandat 202.145 kb on - strandat 202.159 kb on - strand, within OHPLBJKB_00185at 202.159 kb on - strand, within OHPLBJKB_00185at 202.161 kb on - strand, within OHPLBJKB_00185

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP5
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199,465 + OHPLBJKB_00183 0.68 +0.3
199,465 + OHPLBJKB_00183 0.68 -0.9
199,466 - OHPLBJKB_00183 0.68 -0.3
199,466 - OHPLBJKB_00183 0.68 -0.8
199,480 + OHPLBJKB_00183 0.69 +1.5
199,480 + OHPLBJKB_00183 0.69 -0.0
199,480 + OHPLBJKB_00183 0.69 -0.5
199,481 - OHPLBJKB_00183 0.69 -0.9
199,481 - OHPLBJKB_00183 0.69 -0.4
199,481 - OHPLBJKB_00183 0.69 -0.5
199,481 - OHPLBJKB_00183 0.69 -0.4
199,490 + OHPLBJKB_00183 0.69 +0.4
199,511 + OHPLBJKB_00183 0.70 -0.1
199,511 + OHPLBJKB_00183 0.70 -1.2
199,511 + OHPLBJKB_00183 0.70 +0.8
199,511 + OHPLBJKB_00183 0.70 -1.6
199,511 + OHPLBJKB_00183 0.70 +0.1
199,511 + OHPLBJKB_00183 0.70 +0.4
199,511 + OHPLBJKB_00183 0.70 -0.4
199,511 + OHPLBJKB_00183 0.70 -0.1
199,511 + OHPLBJKB_00183 0.70 -0.4
199,511 + OHPLBJKB_00183 0.70 -0.2
199,511 + OHPLBJKB_00183 0.70 +0.8
199,511 + OHPLBJKB_00183 0.70 -0.6
199,511 + OHPLBJKB_00183 0.70 -0.3
199,512 - OHPLBJKB_00183 0.71 -0.3
199,512 - OHPLBJKB_00183 0.71 -0.1
199,512 - OHPLBJKB_00183 0.71 -0.0
199,512 - OHPLBJKB_00183 0.71 +0.0
199,512 - OHPLBJKB_00183 0.71 -0.4
199,512 - OHPLBJKB_00183 0.71 -0.3
199,512 - OHPLBJKB_00183 0.71 -0.0
199,512 - OHPLBJKB_00183 0.71 +1.6
199,512 - OHPLBJKB_00183 0.71 -0.8
199,513 + OHPLBJKB_00183 0.71 +1.1
199,513 + OHPLBJKB_00183 0.71 +0.6
199,513 + OHPLBJKB_00183 0.71 -0.6
199,513 + OHPLBJKB_00183 0.71 +0.2
199,513 + OHPLBJKB_00183 0.71 -0.8
199,513 + OHPLBJKB_00183 0.71 +0.5
199,513 + OHPLBJKB_00183 0.71 +0.4
199,513 + OHPLBJKB_00183 0.71 -1.0
199,514 - OHPLBJKB_00183 0.71 -0.2
199,514 - OHPLBJKB_00183 0.71 -0.5
199,514 - OHPLBJKB_00183 0.71 +1.7
199,514 - OHPLBJKB_00183 0.71 -0.7
199,514 - OHPLBJKB_00183 0.71 +0.1
199,514 - OHPLBJKB_00183 0.71 +0.1
199,514 - OHPLBJKB_00183 0.71 -1.0
199,514 - OHPLBJKB_00183 0.71 +0.3
199,514 - OHPLBJKB_00183 0.71 +0.3
199,514 - OHPLBJKB_00183 0.71 -0.2
199,514 - OHPLBJKB_00183 0.71 -0.5
199,514 - OHPLBJKB_00183 0.71 +0.6
199,626 + OHPLBJKB_00183 0.77 +1.5
199,627 - OHPLBJKB_00183 0.78 -1.3
199,630 + OHPLBJKB_00183 0.78 -0.4
199,631 - OHPLBJKB_00183 0.78 -1.7
199,713 - OHPLBJKB_00183 0.83 -1.8
199,725 + OHPLBJKB_00183 0.83 +1.2
199,772 + OHPLBJKB_00183 0.86 +1.1
199,773 - OHPLBJKB_00183 0.86 -0.6
199,773 - OHPLBJKB_00183 0.86 -1.9
199,912 - +0.2
199,912 - +0.5
199,918 + -0.4
199,933 + -0.1
199,934 - +0.1
199,971 - -1.2
199,997 + +0.5
200,025 + -2.1
200,045 - -0.0
200,128 + -0.4
200,128 + -1.7
200,128 + -0.6
200,132 - +1.7
200,317 - -0.5
200,377 - -0.2
200,377 - +0.3
200,420 - -1.3
200,420 - +0.5
200,420 - -1.2
200,420 - -2.5
200,420 - -0.3
200,422 + -0.2
200,457 - -0.2
200,457 - +0.0
200,457 - -0.6
200,457 - +0.4
200,460 + -0.3
200,461 - -0.7
200,474 + +0.1
200,474 + -0.8
200,475 - -0.0
200,475 - +0.0
200,484 - +0.2
200,494 + -0.5
200,503 + -0.0
200,542 + OHPLBJKB_00184 0.10 -0.8
200,543 - OHPLBJKB_00184 0.10 +0.4
200,545 + OHPLBJKB_00184 0.10 +0.8
200,607 + OHPLBJKB_00184 0.15 -1.0
200,618 + OHPLBJKB_00184 0.15 -0.2
200,618 + OHPLBJKB_00184 0.15 -0.0
200,619 - OHPLBJKB_00184 0.16 -0.1
200,619 - OHPLBJKB_00184 0.16 -0.1
200,621 + OHPLBJKB_00184 0.16 -1.3
200,621 + OHPLBJKB_00184 0.16 +1.2
200,622 - OHPLBJKB_00184 0.16 -1.1
200,623 + OHPLBJKB_00184 0.16 +1.2
200,623 + OHPLBJKB_00184 0.16 +0.2
200,652 - OHPLBJKB_00184 0.18 -0.2
200,659 + OHPLBJKB_00184 0.18 -0.1
200,659 + OHPLBJKB_00184 0.18 +0.4
200,660 - OHPLBJKB_00184 0.18 +0.3
200,660 - OHPLBJKB_00184 0.18 -0.3
200,671 + OHPLBJKB_00184 0.19 -0.2
200,671 + OHPLBJKB_00184 0.19 +1.7
200,672 - OHPLBJKB_00184 0.19 +0.6
200,672 - OHPLBJKB_00184 0.19 +0.1
200,773 + OHPLBJKB_00184 0.27 -0.5
200,773 + OHPLBJKB_00184 0.27 -0.3
200,774 - OHPLBJKB_00184 0.27 +0.3
200,774 - OHPLBJKB_00184 0.27 -1.0
200,774 - OHPLBJKB_00184 0.27 +0.4
200,774 - OHPLBJKB_00184 0.27 -0.4
200,791 + OHPLBJKB_00184 0.28 -0.6
200,791 + OHPLBJKB_00184 0.28 +0.4
200,791 + OHPLBJKB_00184 0.28 +0.4
200,792 - OHPLBJKB_00184 0.28 -1.0
200,842 - OHPLBJKB_00184 0.31 +0.4
200,890 + OHPLBJKB_00184 0.35 +0.6
200,981 + OHPLBJKB_00184 0.41 +0.8
200,982 - OHPLBJKB_00184 0.41 -1.3
201,008 - OHPLBJKB_00184 0.43 +0.5
201,008 - OHPLBJKB_00184 0.43 -0.5
201,118 - OHPLBJKB_00184 0.51 -0.2
201,121 + OHPLBJKB_00184 0.51 +0.8
201,121 + OHPLBJKB_00184 0.51 -1.9
201,121 + OHPLBJKB_00184 0.51 -0.2
201,122 - OHPLBJKB_00184 0.52 -0.2
201,133 + OHPLBJKB_00184 0.52 -1.3
201,133 + OHPLBJKB_00184 0.52 -1.6
201,238 + OHPLBJKB_00184 0.60 +0.6
201,239 - OHPLBJKB_00184 0.60 +0.5
201,245 - OHPLBJKB_00184 0.60 -1.2
201,355 + OHPLBJKB_00184 0.68 -0.5
201,376 + OHPLBJKB_00184 0.70 -0.4
201,616 + OHPLBJKB_00184 0.87 -0.5
201,638 + OHPLBJKB_00184 0.88 +0.3
201,703 - +0.4
201,741 + -0.5
201,741 + -1.3
201,742 - +0.4
201,771 - -0.3
201,780 - -0.2
201,782 - +1.2
201,802 - +0.8
201,878 - +0.4
201,932 + -0.5
202,082 - -0.5
202,145 - -1.3
202,159 - OHPLBJKB_00185 0.11 +1.0
202,159 - OHPLBJKB_00185 0.11 +0.1
202,161 - OHPLBJKB_00185 0.11 +0.2

Or see this region's nucleotide sequence