Experiment: Inulin from chicory 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14840 and HMPREF1181_RS14845 overlap by 4 nucleotides HMPREF1181_RS14845 and HMPREF1181_RS14850 are separated by 11 nucleotides HMPREF1181_RS14850 and HMPREF1181_RS14855 are separated by 10 nucleotides
HMPREF1181_RS14840: HMPREF1181_RS14840 - insulinase family protein, at 152,078 to 153,388
_RS14840
HMPREF1181_RS14845: HMPREF1181_RS14845 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 153,385 to 154,143
_RS14845
HMPREF1181_RS14850: HMPREF1181_RS14850 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 154,155 to 154,580
_RS14850
HMPREF1181_RS14855: HMPREF1181_RS14855 - transglycosylase domain-containing protein, at 154,591 to 156,918
_RS14855
Position (kb) 154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 153.167 kb on - strand, within HMPREF1181_RS14840 at 153.234 kb on - strand, within HMPREF1181_RS14840 at 153.293 kb on - strand at 153.343 kb on + strand at 154.144 kb on - strand at 154.170 kb on - strand at 154.175 kb on - strand at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.272 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.303 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.363 kb on - strand, within HMPREF1181_RS14850
Per-strain Table
Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C) remove 153,167 - HMPREF1181_RS14840 0.83 +0.9 153,234 - HMPREF1181_RS14840 0.88 +1.1 153,293 - +0.1 153,343 + +1.7 154,144 - -1.0 154,170 - +0.1 154,175 - +0.2 154,245 - HMPREF1181_RS14850 0.21 -3.1 154,245 - HMPREF1181_RS14850 0.21 -1.0 154,272 - HMPREF1181_RS14850 0.27 -2.9 154,274 - HMPREF1181_RS14850 0.28 -2.1 154,274 - HMPREF1181_RS14850 0.28 -2.6 154,303 - HMPREF1181_RS14850 0.35 +0.2 154,315 - HMPREF1181_RS14850 0.38 -1.0 154,315 - HMPREF1181_RS14850 0.38 -3.1 154,363 - HMPREF1181_RS14850 0.49 -3.3
Or see this region's nucleotide sequence