Experiment: Inulin from chicory 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS11590 and HMPREF1181_RS11595 are separated by 4 nucleotides HMPREF1181_RS11595 and HMPREF1181_RS11600 overlap by 8 nucleotides HMPREF1181_RS11600 and HMPREF1181_RS11605 are separated by 163 nucleotides
HMPREF1181_RS11590: HMPREF1181_RS11590 - DEAD/DEAH box helicase family protein, at 319,851 to 322,751
_RS11590
HMPREF1181_RS11595: HMPREF1181_RS11595 - DUF3307 domain-containing protein, at 322,756 to 323,445
_RS11595
HMPREF1181_RS11600: HMPREF1181_RS11600 - RNA polymerase subunit sigma-70, at 323,438 to 324,145
_RS11600
HMPREF1181_RS11605: HMPREF1181_RS11605 - helix-turn-helix domain-containing protein, at 324,309 to 324,641
_RS11605
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 321.775 kb on - strand, within HMPREF1181_RS11590 at 321.849 kb on + strand, within HMPREF1181_RS11590 at 321.873 kb on - strand, within HMPREF1181_RS11590 at 321.889 kb on + strand, within HMPREF1181_RS11590 at 321.892 kb on - strand, within HMPREF1181_RS11590 at 322.056 kb on - strand, within HMPREF1181_RS11590 at 322.085 kb on + strand, within HMPREF1181_RS11590 at 322.150 kb on - strand, within HMPREF1181_RS11590 at 322.243 kb on + strand, within HMPREF1181_RS11590 at 322.295 kb on + strand, within HMPREF1181_RS11590 at 322.315 kb on + strand, within HMPREF1181_RS11590 at 322.315 kb on + strand, within HMPREF1181_RS11590 at 322.316 kb on - strand, within HMPREF1181_RS11590 at 322.316 kb on - strand, within HMPREF1181_RS11590 at 322.317 kb on + strand, within HMPREF1181_RS11590 at 322.324 kb on - strand, within HMPREF1181_RS11590 at 322.324 kb on - strand, within HMPREF1181_RS11590 at 322.325 kb on + strand, within HMPREF1181_RS11590 at 322.597 kb on - strand at 322.597 kb on - strand at 322.600 kb on - strand at 322.623 kb on - strand at 322.698 kb on + strand at 322.699 kb on - strand at 322.699 kb on - strand at 322.799 kb on - strand at 322.895 kb on + strand, within HMPREF1181_RS11595 at 322.906 kb on + strand, within HMPREF1181_RS11595 at 322.906 kb on + strand, within HMPREF1181_RS11595 at 322.909 kb on + strand, within HMPREF1181_RS11595 at 322.910 kb on - strand, within HMPREF1181_RS11595 at 322.981 kb on + strand, within HMPREF1181_RS11595 at 323.094 kb on - strand, within HMPREF1181_RS11595 at 323.211 kb on - strand, within HMPREF1181_RS11595 at 323.303 kb on - strand, within HMPREF1181_RS11595 at 323.303 kb on - strand, within HMPREF1181_RS11595 at 323.323 kb on + strand, within HMPREF1181_RS11595 at 323.323 kb on + strand, within HMPREF1181_RS11595 at 323.327 kb on + strand, within HMPREF1181_RS11595 at 323.371 kb on + strand, within HMPREF1181_RS11595 at 323.372 kb on + strand, within HMPREF1181_RS11595 at 323.440 kb on - strand at 323.525 kb on + strand, within HMPREF1181_RS11600 at 323.689 kb on + strand, within HMPREF1181_RS11600 at 323.751 kb on + strand, within HMPREF1181_RS11600 at 323.794 kb on + strand, within HMPREF1181_RS11600 at 323.832 kb on + strand, within HMPREF1181_RS11600 at 323.897 kb on + strand, within HMPREF1181_RS11600 at 323.906 kb on + strand, within HMPREF1181_RS11600 at 323.936 kb on + strand, within HMPREF1181_RS11600 at 323.949 kb on + strand, within HMPREF1181_RS11600 at 324.097 kb on + strand at 324.104 kb on - strand at 324.127 kb on + strand at 324.217 kb on + strand at 324.307 kb on + strand at 324.310 kb on + strand at 324.311 kb on - strand at 324.311 kb on - strand at 324.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C) remove 321,775 - HMPREF1181_RS11590 0.66 -1.3 321,849 + HMPREF1181_RS11590 0.69 +0.5 321,873 - HMPREF1181_RS11590 0.70 -0.9 321,889 + HMPREF1181_RS11590 0.70 +0.8 321,892 - HMPREF1181_RS11590 0.70 -0.2 322,056 - HMPREF1181_RS11590 0.76 -0.3 322,085 + HMPREF1181_RS11590 0.77 -2.6 322,150 - HMPREF1181_RS11590 0.79 +0.9 322,243 + HMPREF1181_RS11590 0.82 +0.5 322,295 + HMPREF1181_RS11590 0.84 +0.9 322,315 + HMPREF1181_RS11590 0.85 -0.1 322,315 + HMPREF1181_RS11590 0.85 +0.5 322,316 - HMPREF1181_RS11590 0.85 -0.5 322,316 - HMPREF1181_RS11590 0.85 -2.3 322,317 + HMPREF1181_RS11590 0.85 +0.6 322,324 - HMPREF1181_RS11590 0.85 +0.5 322,324 - HMPREF1181_RS11590 0.85 +0.2 322,325 + HMPREF1181_RS11590 0.85 +0.2 322,597 - +0.3 322,597 - +0.8 322,600 - -1.9 322,623 - -2.1 322,698 + +0.0 322,699 - +0.5 322,699 - +0.9 322,799 - +0.4 322,895 + HMPREF1181_RS11595 0.20 -1.9 322,906 + HMPREF1181_RS11595 0.22 -0.2 322,906 + HMPREF1181_RS11595 0.22 +0.9 322,909 + HMPREF1181_RS11595 0.22 +0.8 322,910 - HMPREF1181_RS11595 0.22 -0.6 322,981 + HMPREF1181_RS11595 0.33 +1.1 323,094 - HMPREF1181_RS11595 0.49 -1.7 323,211 - HMPREF1181_RS11595 0.66 +0.7 323,303 - HMPREF1181_RS11595 0.79 +0.6 323,303 - HMPREF1181_RS11595 0.79 +1.0 323,323 + HMPREF1181_RS11595 0.82 +0.3 323,323 + HMPREF1181_RS11595 0.82 -2.2 323,327 + HMPREF1181_RS11595 0.83 -0.8 323,371 + HMPREF1181_RS11595 0.89 -0.5 323,372 + HMPREF1181_RS11595 0.89 -0.3 323,440 - +0.9 323,525 + HMPREF1181_RS11600 0.12 +0.9 323,689 + HMPREF1181_RS11600 0.35 -2.8 323,751 + HMPREF1181_RS11600 0.44 +0.7 323,794 + HMPREF1181_RS11600 0.50 -0.4 323,832 + HMPREF1181_RS11600 0.56 +0.0 323,897 + HMPREF1181_RS11600 0.65 +0.7 323,906 + HMPREF1181_RS11600 0.66 +0.1 323,936 + HMPREF1181_RS11600 0.70 -0.2 323,949 + HMPREF1181_RS11600 0.72 -0.1 324,097 + -2.1 324,104 - +0.7 324,127 + -0.5 324,217 + -2.1 324,307 + -0.7 324,310 + +0.1 324,311 - -1.8 324,311 - -1.9 324,324 - +0.7
Or see this region's nucleotide sequence