Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS03400

Experiment: Inulin from chicory 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS03390 and HMPREF1181_RS03395 overlap by 4 nucleotidesHMPREF1181_RS03395 and HMPREF1181_RS03400 are separated by 78 nucleotidesHMPREF1181_RS03400 and HMPREF1181_RS03405 are separated by 94 nucleotidesHMPREF1181_RS03405 and HMPREF1181_RS03410 are separated by 12 nucleotides HMPREF1181_RS03390: HMPREF1181_RS03390 - peptide chain release factor N(5)-glutamine methyltransferase, at 863,084 to 863,920 _RS03390 HMPREF1181_RS03395: HMPREF1181_RS03395 - RecX family transcriptional regulator, at 863,917 to 864,396 _RS03395 HMPREF1181_RS03400: HMPREF1181_RS03400 - orotate phosphoribosyltransferase, at 864,475 to 865,113 _RS03400 HMPREF1181_RS03405: HMPREF1181_RS03405 - SRPBCC family protein, at 865,208 to 865,618 _RS03405 HMPREF1181_RS03410: HMPREF1181_RS03410 - argininosuccinate lyase, at 865,631 to 866,971 _RS03410 Position (kb) 864 865 866Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 863.592 kb on - strand, within HMPREF1181_RS03390at 863.643 kb on - strand, within HMPREF1181_RS03390at 863.828 kb on - strand, within HMPREF1181_RS03390at 863.865 kb on + strandat 863.922 kb on - strandat 863.963 kb on - strandat 864.028 kb on + strand, within HMPREF1181_RS03395at 864.038 kb on + strand, within HMPREF1181_RS03395at 864.039 kb on - strand, within HMPREF1181_RS03395at 864.052 kb on - strand, within HMPREF1181_RS03395at 864.074 kb on - strand, within HMPREF1181_RS03395at 864.114 kb on + strand, within HMPREF1181_RS03395at 864.115 kb on - strand, within HMPREF1181_RS03395at 864.115 kb on - strand, within HMPREF1181_RS03395at 864.150 kb on - strand, within HMPREF1181_RS03395at 864.193 kb on + strand, within HMPREF1181_RS03395at 864.199 kb on + strand, within HMPREF1181_RS03395at 864.361 kb on - strandat 864.458 kb on + strandat 864.459 kb on - strandat 864.465 kb on + strandat 864.529 kb on - strandat 864.534 kb on - strandat 864.583 kb on + strand, within HMPREF1181_RS03400at 864.584 kb on - strand, within HMPREF1181_RS03400at 864.598 kb on - strand, within HMPREF1181_RS03400at 864.646 kb on - strand, within HMPREF1181_RS03400at 864.708 kb on + strand, within HMPREF1181_RS03400at 864.755 kb on + strand, within HMPREF1181_RS03400at 864.755 kb on + strand, within HMPREF1181_RS03400at 864.758 kb on - strand, within HMPREF1181_RS03400at 864.758 kb on - strand, within HMPREF1181_RS03400at 864.758 kb on - strand, within HMPREF1181_RS03400at 864.931 kb on + strand, within HMPREF1181_RS03400at 864.938 kb on - strand, within HMPREF1181_RS03400at 865.081 kb on - strandat 865.112 kb on - strandat 865.207 kb on + strandat 865.208 kb on - strandat 865.262 kb on + strand, within HMPREF1181_RS03405at 865.263 kb on - strand, within HMPREF1181_RS03405at 865.513 kb on + strand, within HMPREF1181_RS03405at 865.613 kb on + strandat 865.616 kb on + strandat 865.669 kb on + strandat 865.669 kb on + strandat 865.669 kb on + strandat 865.670 kb on - strandat 865.676 kb on - strandat 865.677 kb on + strandat 865.678 kb on - strandat 865.756 kb on + strandat 865.757 kb on - strandat 865.832 kb on + strand, within HMPREF1181_RS03410at 865.929 kb on + strand, within HMPREF1181_RS03410at 865.929 kb on + strand, within HMPREF1181_RS03410at 865.930 kb on - strand, within HMPREF1181_RS03410at 865.984 kb on - strand, within HMPREF1181_RS03410at 866.008 kb on - strand, within HMPREF1181_RS03410at 866.016 kb on + strand, within HMPREF1181_RS03410at 866.029 kb on - strand, within HMPREF1181_RS03410at 866.069 kb on + strand, within HMPREF1181_RS03410at 866.071 kb on + strand, within HMPREF1181_RS03410at 866.071 kb on - strand, within HMPREF1181_RS03410at 866.072 kb on - strand, within HMPREF1181_RS03410at 866.072 kb on - strand, within HMPREF1181_RS03410at 866.079 kb on + strand, within HMPREF1181_RS03410at 866.096 kb on - strand, within HMPREF1181_RS03410

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Per-strain Table

Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C)
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863,592 - HMPREF1181_RS03390 0.61 +1.2
863,643 - HMPREF1181_RS03390 0.67 -0.9
863,828 - HMPREF1181_RS03390 0.89 -0.4
863,865 + -1.0
863,922 - -2.5
863,963 - -0.5
864,028 + HMPREF1181_RS03395 0.23 -1.7
864,038 + HMPREF1181_RS03395 0.25 -1.0
864,039 - HMPREF1181_RS03395 0.25 +0.9
864,052 - HMPREF1181_RS03395 0.28 -1.8
864,074 - HMPREF1181_RS03395 0.33 +0.1
864,114 + HMPREF1181_RS03395 0.41 -4.0
864,115 - HMPREF1181_RS03395 0.41 -1.2
864,115 - HMPREF1181_RS03395 0.41 +0.2
864,150 - HMPREF1181_RS03395 0.49 -0.7
864,193 + HMPREF1181_RS03395 0.57 -1.3
864,199 + HMPREF1181_RS03395 0.59 -3.1
864,361 - +0.0
864,458 + -3.3
864,459 - -2.4
864,465 + -4.2
864,529 - -0.8
864,534 - -1.6
864,583 + HMPREF1181_RS03400 0.17 -0.8
864,584 - HMPREF1181_RS03400 0.17 -4.0
864,598 - HMPREF1181_RS03400 0.19 -1.8
864,646 - HMPREF1181_RS03400 0.27 -2.0
864,708 + HMPREF1181_RS03400 0.36 -0.8
864,755 + HMPREF1181_RS03400 0.44 -2.3
864,755 + HMPREF1181_RS03400 0.44 -3.7
864,758 - HMPREF1181_RS03400 0.44 -1.8
864,758 - HMPREF1181_RS03400 0.44 -1.8
864,758 - HMPREF1181_RS03400 0.44 -2.3
864,931 + HMPREF1181_RS03400 0.71 -3.0
864,938 - HMPREF1181_RS03400 0.72 -1.4
865,081 - -0.4
865,112 - -5.8
865,207 + -4.3
865,208 - -4.9
865,262 + HMPREF1181_RS03405 0.13 -5.3
865,263 - HMPREF1181_RS03405 0.13 -5.4
865,513 + HMPREF1181_RS03405 0.74 -5.9
865,613 + -0.1
865,616 + -3.2
865,669 + -7.1
865,669 + -4.6
865,669 + -4.3
865,670 - -6.9
865,676 - -6.3
865,677 + -4.7
865,678 - -4.3
865,756 + -4.0
865,757 - -3.9
865,832 + HMPREF1181_RS03410 0.15 -5.3
865,929 + HMPREF1181_RS03410 0.22 -4.1
865,929 + HMPREF1181_RS03410 0.22 -5.7
865,930 - HMPREF1181_RS03410 0.22 -5.0
865,984 - HMPREF1181_RS03410 0.26 -2.7
866,008 - HMPREF1181_RS03410 0.28 -5.0
866,016 + HMPREF1181_RS03410 0.29 -6.5
866,029 - HMPREF1181_RS03410 0.30 -5.4
866,069 + HMPREF1181_RS03410 0.33 -4.1
866,071 + HMPREF1181_RS03410 0.33 -2.1
866,071 - HMPREF1181_RS03410 0.33 -5.7
866,072 - HMPREF1181_RS03410 0.33 -3.4
866,072 - HMPREF1181_RS03410 0.33 -7.2
866,079 + HMPREF1181_RS03410 0.33 -5.4
866,096 - HMPREF1181_RS03410 0.35 -5.0

Or see this region's nucleotide sequence