Strain Fitness in Erwinia amylovora T8 around OLJFJH_03960

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03955 and OLJFJH_03960 are separated by 0 nucleotidesOLJFJH_03960 and OLJFJH_03965 are separated by 126 nucleotides OLJFJH_03955: OLJFJH_03955 - glutathione-regulated potassium-efflux system protein KefB, at 749,945 to 751,750 _03955 OLJFJH_03960: OLJFJH_03960 - glutathione-regulated potassium-efflux system ancillary protein KefG, at 751,751 to 752,302 _03960 OLJFJH_03965: OLJFJH_03965 - ABC transporter ATP-binding protein, at 752,429 to 754,330 _03965 Position (kb) 751 752 753Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 750.823 kb on - strand, within OLJFJH_03955at 750.888 kb on + strand, within OLJFJH_03955at 750.888 kb on + strand, within OLJFJH_03955at 750.888 kb on + strand, within OLJFJH_03955at 750.889 kb on - strand, within OLJFJH_03955at 750.889 kb on - strand, within OLJFJH_03955at 751.018 kb on + strand, within OLJFJH_03955at 751.379 kb on - strand, within OLJFJH_03955at 751.543 kb on + strand, within OLJFJH_03955at 751.544 kb on - strand, within OLJFJH_03955at 751.611 kb on - strandat 751.611 kb on - strandat 751.647 kb on + strandat 751.648 kb on - strandat 751.713 kb on + strandat 751.713 kb on + strandat 751.713 kb on + strandat 751.714 kb on - strandat 751.715 kb on + strandat 751.715 kb on + strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.794 kb on + strandat 751.846 kb on - strand, within OLJFJH_03960at 751.910 kb on - strand, within OLJFJH_03960at 751.910 kb on - strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.089 kb on + strand, within OLJFJH_03960at 752.090 kb on - strand, within OLJFJH_03960at 752.091 kb on + strand, within OLJFJH_03960at 752.091 kb on + strand, within OLJFJH_03960at 752.092 kb on - strand, within OLJFJH_03960at 752.181 kb on + strand, within OLJFJH_03960at 752.271 kb on + strandat 752.271 kb on + strandat 752.271 kb on + strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.429 kb on - strandat 752.437 kb on - strandat 752.437 kb on - strandat 752.569 kb on + strandat 752.570 kb on - strandat 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.940 kb on + strand, within OLJFJH_03965at 752.940 kb on + strand, within OLJFJH_03965at 753.011 kb on + strand, within OLJFJH_03965at 753.012 kb on - strand, within OLJFJH_03965at 753.079 kb on - strand, within OLJFJH_03965at 753.082 kb on + strand, within OLJFJH_03965at 753.082 kb on + strand, within OLJFJH_03965at 753.083 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.120 kb on - strand, within OLJFJH_03965at 753.268 kb on + strand, within OLJFJH_03965

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-8
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750,823 - OLJFJH_03955 0.49 -0.6
750,888 + OLJFJH_03955 0.52 -1.7
750,888 + OLJFJH_03955 0.52 -0.5
750,888 + OLJFJH_03955 0.52 -1.1
750,889 - OLJFJH_03955 0.52 -0.3
750,889 - OLJFJH_03955 0.52 -0.1
751,018 + OLJFJH_03955 0.59 -1.1
751,379 - OLJFJH_03955 0.79 +0.3
751,543 + OLJFJH_03955 0.88 -0.4
751,544 - OLJFJH_03955 0.89 +0.4
751,611 - +1.1
751,611 - -0.7
751,647 + -0.4
751,648 - -1.7
751,713 + +4.2
751,713 + +0.1
751,713 + +1.4
751,714 - +1.1
751,715 + -0.5
751,715 + -0.3
751,716 - -1.5
751,716 - -0.0
751,716 - -0.6
751,716 - -0.4
751,752 + -1.0
751,752 + -1.5
751,752 + -0.7
751,752 + -0.5
751,752 + -1.1
751,794 + -0.1
751,846 - OLJFJH_03960 0.17 +0.9
751,910 - OLJFJH_03960 0.29 +1.0
751,910 - OLJFJH_03960 0.29 +0.5
752,085 + OLJFJH_03960 0.61 -0.3
752,085 + OLJFJH_03960 0.61 -0.3
752,085 + OLJFJH_03960 0.61 +2.2
752,086 - OLJFJH_03960 0.61 -2.1
752,086 - OLJFJH_03960 0.61 -1.6
752,086 - OLJFJH_03960 0.61 +2.0
752,089 + OLJFJH_03960 0.61 +0.7
752,090 - OLJFJH_03960 0.61 +0.3
752,091 + OLJFJH_03960 0.62 -0.4
752,091 + OLJFJH_03960 0.62 +1.9
752,092 - OLJFJH_03960 0.62 -0.4
752,181 + OLJFJH_03960 0.78 +0.1
752,271 + -0.1
752,271 + -0.3
752,271 + +1.3
752,272 - -0.9
752,272 - -0.1
752,272 - -0.2
752,272 - -0.1
752,272 - +1.8
752,429 - -0.8
752,437 - -1.5
752,437 - -1.0
752,569 + +0.0
752,570 - +0.3
752,675 + OLJFJH_03965 0.13 +2.4
752,675 + OLJFJH_03965 0.13 -0.3
752,675 + OLJFJH_03965 0.13 +0.4
752,675 + OLJFJH_03965 0.13 +1.2
752,676 - OLJFJH_03965 0.13 +0.8
752,676 - OLJFJH_03965 0.13 -1.5
752,676 - OLJFJH_03965 0.13 -1.5
752,940 + OLJFJH_03965 0.27 -0.9
752,940 + OLJFJH_03965 0.27 -0.3
753,011 + OLJFJH_03965 0.31 -1.7
753,012 - OLJFJH_03965 0.31 +0.5
753,079 - OLJFJH_03965 0.34 -0.6
753,082 + OLJFJH_03965 0.34 -0.1
753,082 + OLJFJH_03965 0.34 +0.7
753,083 - OLJFJH_03965 0.34 -0.2
753,120 - OLJFJH_03965 0.36 -1.1
753,120 - OLJFJH_03965 0.36 -1.0
753,120 - OLJFJH_03965 0.36 -1.0
753,120 - OLJFJH_03965 0.36 +0.5
753,120 - OLJFJH_03965 0.36 +1.4
753,120 - OLJFJH_03965 0.36 -1.3
753,268 + OLJFJH_03965 0.44 -1.0

Or see this region's nucleotide sequence