Strain Fitness in Erwinia amylovora T8 around OLJFJH_02225

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02220 and OLJFJH_02225 overlap by 4 nucleotidesOLJFJH_02225 and OLJFJH_02230 are separated by 167 nucleotidesOLJFJH_02230 and OLJFJH_02235 are separated by 42 nucleotidesOLJFJH_02235 and OLJFJH_02240 are separated by 1 nucleotides OLJFJH_02220: OLJFJH_02220 - DedA family protein, at 394,568 to 395,242 _02220 OLJFJH_02225: OLJFJH_02225 - EnvZ/OmpR regulon moderator MzrA, at 395,239 to 395,631 _02225 OLJFJH_02230: OLJFJH_02230 - DUF1090 domain-containing protein, at 395,799 to 396,170 _02230 OLJFJH_02235: OLJFJH_02235 - DUF883 domain-containing protein, at 396,213 to 396,518 _02235 OLJFJH_02240: OLJFJH_02240 - Membrane protein, at 396,520 to 396,912 _02240 Position (kb) 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 394.293 kb on + strandat 394.317 kb on + strandat 394.341 kb on - strandat 394.341 kb on - strandat 394.420 kb on - strandat 394.484 kb on - strandat 394.492 kb on + strandat 394.513 kb on - strandat 394.580 kb on - strandat 394.591 kb on - strandat 394.653 kb on - strand, within OLJFJH_02220at 394.653 kb on - strand, within OLJFJH_02220at 394.653 kb on - strand, within OLJFJH_02220at 394.725 kb on + strand, within OLJFJH_02220at 394.726 kb on - strand, within OLJFJH_02220at 394.726 kb on - strand, within OLJFJH_02220at 394.726 kb on - strand, within OLJFJH_02220at 394.730 kb on - strand, within OLJFJH_02220at 394.772 kb on - strand, within OLJFJH_02220at 394.772 kb on - strand, within OLJFJH_02220at 394.773 kb on - strand, within OLJFJH_02220at 394.782 kb on + strand, within OLJFJH_02220at 394.782 kb on + strand, within OLJFJH_02220at 394.782 kb on + strand, within OLJFJH_02220at 394.782 kb on + strand, within OLJFJH_02220at 394.782 kb on + strand, within OLJFJH_02220at 394.783 kb on - strand, within OLJFJH_02220at 394.783 kb on - strand, within OLJFJH_02220at 394.783 kb on - strand, within OLJFJH_02220at 394.783 kb on - strand, within OLJFJH_02220at 394.783 kb on - strand, within OLJFJH_02220at 394.783 kb on - strand, within OLJFJH_02220at 394.826 kb on + strand, within OLJFJH_02220at 394.826 kb on + strand, within OLJFJH_02220at 394.826 kb on + strand, within OLJFJH_02220at 394.827 kb on - strand, within OLJFJH_02220at 394.827 kb on - strand, within OLJFJH_02220at 394.827 kb on - strand, within OLJFJH_02220at 394.828 kb on + strand, within OLJFJH_02220at 394.828 kb on + strand, within OLJFJH_02220at 394.828 kb on + strand, within OLJFJH_02220at 394.829 kb on - strand, within OLJFJH_02220at 394.829 kb on - strand, within OLJFJH_02220at 394.830 kb on + strand, within OLJFJH_02220at 394.831 kb on - strand, within OLJFJH_02220at 394.831 kb on - strand, within OLJFJH_02220at 394.852 kb on + strand, within OLJFJH_02220at 394.895 kb on + strand, within OLJFJH_02220at 395.015 kb on - strand, within OLJFJH_02220at 395.017 kb on + strand, within OLJFJH_02220at 395.169 kb on + strand, within OLJFJH_02220at 395.193 kb on - strandat 395.411 kb on - strand, within OLJFJH_02225at 395.416 kb on + strand, within OLJFJH_02225at 395.556 kb on + strand, within OLJFJH_02225at 395.669 kb on + strandat 395.670 kb on - strandat 395.670 kb on - strandat 395.672 kb on + strandat 395.672 kb on + strandat 395.706 kb on + strandat 395.706 kb on + strandat 395.706 kb on + strandat 395.706 kb on + strandat 395.707 kb on - strandat 395.726 kb on + strandat 395.761 kb on - strandat 395.793 kb on - strandat 395.806 kb on + strandat 395.807 kb on - strandat 395.807 kb on - strandat 395.807 kb on - strandat 395.810 kb on + strandat 395.810 kb on + strandat 395.811 kb on - strandat 395.847 kb on + strand, within OLJFJH_02230at 395.847 kb on + strand, within OLJFJH_02230at 395.847 kb on + strand, within OLJFJH_02230at 395.847 kb on + strand, within OLJFJH_02230at 395.848 kb on - strand, within OLJFJH_02230at 395.848 kb on - strand, within OLJFJH_02230at 395.848 kb on - strand, within OLJFJH_02230at 395.903 kb on - strand, within OLJFJH_02230at 395.928 kb on - strand, within OLJFJH_02230at 395.928 kb on - strand, within OLJFJH_02230at 395.960 kb on - strand, within OLJFJH_02230at 395.981 kb on + strand, within OLJFJH_02230at 396.061 kb on + strand, within OLJFJH_02230at 396.061 kb on + strand, within OLJFJH_02230at 396.062 kb on - strand, within OLJFJH_02230at 396.073 kb on + strand, within OLJFJH_02230at 396.105 kb on - strand, within OLJFJH_02230at 396.166 kb on - strandat 396.190 kb on + strandat 396.436 kb on - strand, within OLJFJH_02235at 396.436 kb on - strand, within OLJFJH_02235at 396.436 kb on - strand, within OLJFJH_02235

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-8
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394,293 + +0.5
394,317 + +0.7
394,341 - -0.8
394,341 - +1.0
394,420 - -0.8
394,484 - -0.1
394,492 + +0.2
394,513 - -0.8
394,580 - +0.5
394,591 - -1.3
394,653 - OLJFJH_02220 0.13 +0.3
394,653 - OLJFJH_02220 0.13 +1.0
394,653 - OLJFJH_02220 0.13 +0.4
394,725 + OLJFJH_02220 0.23 -0.3
394,726 - OLJFJH_02220 0.23 +0.1
394,726 - OLJFJH_02220 0.23 +0.8
394,726 - OLJFJH_02220 0.23 -2.4
394,730 - OLJFJH_02220 0.24 +4.4
394,772 - OLJFJH_02220 0.30 -3.1
394,772 - OLJFJH_02220 0.30 -1.9
394,773 - OLJFJH_02220 0.30 -1.0
394,782 + OLJFJH_02220 0.32 -0.4
394,782 + OLJFJH_02220 0.32 +3.7
394,782 + OLJFJH_02220 0.32 -0.5
394,782 + OLJFJH_02220 0.32 +1.8
394,782 + OLJFJH_02220 0.32 +0.8
394,783 - OLJFJH_02220 0.32 +0.0
394,783 - OLJFJH_02220 0.32 +0.1
394,783 - OLJFJH_02220 0.32 +0.9
394,783 - OLJFJH_02220 0.32 +1.2
394,783 - OLJFJH_02220 0.32 +1.1
394,783 - OLJFJH_02220 0.32 -0.9
394,826 + OLJFJH_02220 0.38 +1.3
394,826 + OLJFJH_02220 0.38 -0.4
394,826 + OLJFJH_02220 0.38 +0.0
394,827 - OLJFJH_02220 0.38 +2.6
394,827 - OLJFJH_02220 0.38 +1.8
394,827 - OLJFJH_02220 0.38 -0.9
394,828 + OLJFJH_02220 0.39 +0.5
394,828 + OLJFJH_02220 0.39 +0.3
394,828 + OLJFJH_02220 0.39 -1.2
394,829 - OLJFJH_02220 0.39 +3.0
394,829 - OLJFJH_02220 0.39 -0.9
394,830 + OLJFJH_02220 0.39 -1.2
394,831 - OLJFJH_02220 0.39 -1.4
394,831 - OLJFJH_02220 0.39 -1.2
394,852 + OLJFJH_02220 0.42 -1.0
394,895 + OLJFJH_02220 0.48 +1.7
395,015 - OLJFJH_02220 0.66 -0.8
395,017 + OLJFJH_02220 0.67 -1.3
395,169 + OLJFJH_02220 0.89 -2.4
395,193 - -0.3
395,411 - OLJFJH_02225 0.44 -1.4
395,416 + OLJFJH_02225 0.45 +2.9
395,556 + OLJFJH_02225 0.81 +0.0
395,669 + -1.1
395,670 - -0.4
395,670 - +0.1
395,672 + -1.7
395,672 + -2.0
395,706 + +0.0
395,706 + -1.1
395,706 + -0.2
395,706 + -0.9
395,707 - -2.3
395,726 + -1.9
395,761 - +0.0
395,793 - +0.2
395,806 + +0.2
395,807 - +0.4
395,807 - -1.9
395,807 - -0.4
395,810 + -0.5
395,810 + +2.5
395,811 - +1.4
395,847 + OLJFJH_02230 0.13 -0.4
395,847 + OLJFJH_02230 0.13 +1.9
395,847 + OLJFJH_02230 0.13 +0.1
395,847 + OLJFJH_02230 0.13 -0.9
395,848 - OLJFJH_02230 0.13 -0.1
395,848 - OLJFJH_02230 0.13 +0.1
395,848 - OLJFJH_02230 0.13 +0.2
395,903 - OLJFJH_02230 0.28 +0.5
395,928 - OLJFJH_02230 0.35 -0.3
395,928 - OLJFJH_02230 0.35 +0.9
395,960 - OLJFJH_02230 0.43 +0.4
395,981 + OLJFJH_02230 0.49 +0.4
396,061 + OLJFJH_02230 0.70 +1.8
396,061 + OLJFJH_02230 0.70 +2.3
396,062 - OLJFJH_02230 0.71 +0.4
396,073 + OLJFJH_02230 0.74 -0.8
396,105 - OLJFJH_02230 0.82 +1.9
396,166 - +0.0
396,190 + +0.6
396,436 - OLJFJH_02235 0.73 -0.6
396,436 - OLJFJH_02235 0.73 +0.3
396,436 - OLJFJH_02235 0.73 -0.3

Or see this region's nucleotide sequence