Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS10505

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS10495 and HMPREF1181_RS10500 are separated by 14 nucleotidesHMPREF1181_RS10500 and HMPREF1181_RS10505 are separated by 182 nucleotidesHMPREF1181_RS10505 and HMPREF1181_RS10510 are separated by 71 nucleotidesHMPREF1181_RS10510 and HMPREF1181_RS10515 are separated by 444 nucleotides HMPREF1181_RS10495: HMPREF1181_RS10495 - hypothetical protein, at 72,812 to 73,072 _RS10495 HMPREF1181_RS10500: HMPREF1181_RS10500 - hypothetical protein, at 73,087 to 73,416 _RS10500 HMPREF1181_RS10505: HMPREF1181_RS10505 - hypothetical protein, at 73,599 to 73,901 _RS10505 HMPREF1181_RS10510: HMPREF1181_RS10510 - hypothetical protein, at 73,973 to 74,272 _RS10510 HMPREF1181_RS10515: HMPREF1181_RS10515 - site-specific integrase, at 74,717 to 75,715 _RS10515 Position (kb) 73 74Strain fitness (log2 ratio) -2 -1 0 1 2at 73.123 kb on + strand, within HMPREF1181_RS10500at 73.171 kb on - strand, within HMPREF1181_RS10500at 73.171 kb on - strand, within HMPREF1181_RS10500at 74.002 kb on + strandat 74.002 kb on + strandat 74.733 kb on + strandat 74.734 kb on - strandat 74.774 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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73,123 + HMPREF1181_RS10500 0.11 -2.0
73,171 - HMPREF1181_RS10500 0.25 +2.0
73,171 - HMPREF1181_RS10500 0.25 +0.6
74,002 + +0.6
74,002 + +0.2
74,733 + +2.3
74,734 - -0.1
74,774 + +0.3

Or see this region's nucleotide sequence