Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26050 and LU632_RS26055 are separated by 44 nucleotides LU632_RS26055 and LU632_RS26060 are separated by 1 nucleotides LU632_RS26060 and LU632_RS26065 overlap by 20 nucleotides LU632_RS26065 and LU632_RS26070 are separated by 118 nucleotides
LU632_RS26050: LU632_RS26050 - DUF1073 domain-containing protein, at 17,772 to 19,157
_RS26050
LU632_RS26055: LU632_RS26055 - DUF2442 domain-containing protein, at 19,202 to 19,450
_RS26055
LU632_RS26060: LU632_RS26060 - CCDC90 family protein, at 19,452 to 19,715
_RS26060
LU632_RS26065: LU632_RS26065 - recombinase family protein, at 19,696 to 20,274
_RS26065
LU632_RS26070: LU632_RS26070 - phage terminase large subunit, at 20,393 to 21,637
_RS26070
Position (kb) 19
20
21 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 18.817 kb on + strand, within LU632_RS26050 at 18.833 kb on + strand, within LU632_RS26050 at 18.834 kb on - strand, within LU632_RS26050 at 18.861 kb on - strand, within LU632_RS26050 at 18.896 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.994 kb on + strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 19.042 kb on + strand at 19.042 kb on + strand at 19.043 kb on - strand at 19.043 kb on - strand at 19.102 kb on + strand at 19.102 kb on + strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.133 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.140 kb on - strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.170 kb on + strand at 19.170 kb on + strand at 19.171 kb on - strand at 19.174 kb on + strand at 19.175 kb on - strand at 19.197 kb on - strand at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.436 kb on - strand at 19.472 kb on + strand at 19.473 kb on - strand at 19.473 kb on - strand at 19.602 kb on - strand, within LU632_RS26060 at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.755 kb on + strand, within LU632_RS26065 at 19.755 kb on + strand, within LU632_RS26065 at 19.914 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.215 kb on + strand, within LU632_RS26065 at 20.275 kb on + strand at 20.275 kb on + strand at 20.395 kb on - strand at 20.420 kb on - strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.429 kb on - strand at 20.440 kb on + strand at 20.440 kb on + strand at 20.441 kb on - strand at 20.441 kb on - strand at 20.443 kb on + strand at 20.443 kb on + strand at 20.444 kb on - strand at 20.444 kb on - strand at 20.445 kb on + strand at 20.445 kb on + strand at 20.446 kb on - strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.461 kb on - strand at 20.544 kb on + strand, within LU632_RS26070 at 20.544 kb on + strand, within LU632_RS26070 at 20.567 kb on - strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.619 kb on - strand, within LU632_RS26070 at 20.662 kb on + strand, within LU632_RS26070 at 20.686 kb on - strand, within LU632_RS26070 at 20.754 kb on + strand, within LU632_RS26070 at 20.755 kb on - strand, within LU632_RS26070 at 20.782 kb on + strand, within LU632_RS26070 at 20.802 kb on + strand, within LU632_RS26070 at 20.811 kb on + strand, within LU632_RS26070 at 20.812 kb on - strand, within LU632_RS26070 at 20.842 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.937 kb on + strand, within LU632_RS26070 at 20.938 kb on - strand, within LU632_RS26070 at 20.959 kb on + strand, within LU632_RS26070 at 20.960 kb on - strand, within LU632_RS26070 at 20.960 kb on - strand, within LU632_RS26070 at 20.972 kb on + strand, within LU632_RS26070 at 20.972 kb on + strand, within LU632_RS26070 at 20.976 kb on + strand, within LU632_RS26070 at 20.977 kb on - strand, within LU632_RS26070 at 21.001 kb on - strand, within LU632_RS26070 at 21.001 kb on - strand, within LU632_RS26070 at 21.079 kb on - strand, within LU632_RS26070 at 21.079 kb on - strand, within LU632_RS26070 at 21.083 kb on - strand, within LU632_RS26070 at 21.083 kb on - strand, within LU632_RS26070 at 21.116 kb on + strand, within LU632_RS26070 at 21.117 kb on - strand, within LU632_RS26070 at 21.173 kb on + strand, within LU632_RS26070 at 21.173 kb on + strand, within LU632_RS26070
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS) remove 18,817 + LU632_RS26050 0.75 -1.1 18,833 + LU632_RS26050 0.77 -1.2 18,834 - LU632_RS26050 0.77 -1.2 18,861 - LU632_RS26050 0.79 -2.3 18,896 + LU632_RS26050 0.81 +1.1 18,923 + LU632_RS26050 0.83 -0.1 18,923 + LU632_RS26050 0.83 -2.8 18,924 - LU632_RS26050 0.83 -4.1 18,924 - LU632_RS26050 0.83 -1.7 18,994 + LU632_RS26050 0.88 -1.7 18,995 - LU632_RS26050 0.88 -3.4 18,995 - LU632_RS26050 0.88 -0.3 19,042 + -2.8 19,042 + -0.3 19,043 - +0.1 19,043 - +0.8 19,102 + -4.7 19,102 + -0.1 19,103 - +1.3 19,103 - -1.7 19,133 + +0.1 19,139 + +1.5 19,139 + +1.0 19,139 + +1.1 19,139 + +0.3 19,139 + -1.2 19,139 + -1.7 19,140 - -0.6 19,142 + -0.5 19,142 + +0.5 19,142 + -3.3 19,142 + -3.5 19,142 + -1.7 19,142 + -1.7 19,143 - -2.5 19,143 - -0.9 19,143 - -1.5 19,143 - +0.5 19,143 - -1.2 19,143 - -3.4 19,170 + +2.3 19,170 + -2.1 19,171 - -1.9 19,174 + -1.5 19,175 - -3.7 19,197 - -2.4 19,408 + LU632_RS26055 0.83 -1.9 19,408 + LU632_RS26055 0.83 +2.6 19,408 + LU632_RS26055 0.83 -1.2 19,408 + LU632_RS26055 0.83 -1.1 19,408 + LU632_RS26055 0.83 -0.3 19,408 + LU632_RS26055 0.83 -1.5 19,409 - LU632_RS26055 0.83 -1.5 19,409 - LU632_RS26055 0.83 -2.9 19,409 - LU632_RS26055 0.83 -0.2 19,409 - LU632_RS26055 0.83 +2.0 19,409 - LU632_RS26055 0.83 +0.6 19,409 - LU632_RS26055 0.83 +1.1 19,409 - LU632_RS26055 0.83 -2.8 19,409 - LU632_RS26055 0.83 -2.9 19,409 - LU632_RS26055 0.83 +2.8 19,409 - LU632_RS26055 0.83 -3.6 19,409 - LU632_RS26055 0.83 -0.1 19,409 - LU632_RS26055 0.83 +0.1 19,413 + LU632_RS26055 0.85 +0.2 19,413 + LU632_RS26055 0.85 -0.2 19,413 + LU632_RS26055 0.85 +0.6 19,413 + LU632_RS26055 0.85 +1.2 19,413 + LU632_RS26055 0.85 +1.6 19,414 - LU632_RS26055 0.85 -3.8 19,414 - LU632_RS26055 0.85 -0.5 19,414 - LU632_RS26055 0.85 +0.6 19,414 - LU632_RS26055 0.85 -0.8 19,414 - LU632_RS26055 0.85 +1.5 19,414 - LU632_RS26055 0.85 -3.1 19,414 - LU632_RS26055 0.85 -2.7 19,414 - LU632_RS26055 0.85 +1.1 19,436 - -4.8 19,472 + -1.2 19,473 - -1.2 19,473 - +1.1 19,602 - LU632_RS26060 0.57 +3.1 19,750 + -0.7 19,750 + -2.1 19,750 + +0.1 19,750 + -0.7 19,755 + LU632_RS26065 0.10 -0.1 19,755 + LU632_RS26065 0.10 -1.7 19,914 + LU632_RS26065 0.38 -0.9 20,129 + LU632_RS26065 0.75 +2.3 20,129 + LU632_RS26065 0.75 +3.4 20,215 + LU632_RS26065 0.90 +1.4 20,275 + +0.2 20,275 + +0.2 20,395 - -0.2 20,420 - -2.6 20,428 + +1.6 20,428 + -0.9 20,429 - +0.2 20,440 + -1.9 20,440 + -0.6 20,441 - +0.1 20,441 - -3.5 20,443 + -0.0 20,443 + -0.1 20,444 - +1.4 20,444 - +0.9 20,445 + -3.9 20,445 + -1.5 20,446 - +0.8 20,460 + +0.5 20,460 + +1.1 20,460 + -0.5 20,460 + +0.1 20,461 - +1.5 20,544 + LU632_RS26070 0.12 +0.3 20,544 + LU632_RS26070 0.12 -1.8 20,567 - LU632_RS26070 0.14 +2.7 20,572 + LU632_RS26070 0.14 +1.1 20,572 + LU632_RS26070 0.14 +0.2 20,573 - LU632_RS26070 0.14 +1.4 20,573 - LU632_RS26070 0.14 +0.6 20,619 - LU632_RS26070 0.18 -1.2 20,662 + LU632_RS26070 0.22 -1.2 20,686 - LU632_RS26070 0.24 +0.8 20,754 + LU632_RS26070 0.29 -1.2 20,755 - LU632_RS26070 0.29 -2.1 20,782 + LU632_RS26070 0.31 +3.0 20,802 + LU632_RS26070 0.33 +1.1 20,811 + LU632_RS26070 0.34 -1.4 20,812 - LU632_RS26070 0.34 -1.9 20,842 + LU632_RS26070 0.36 -2.2 20,937 + LU632_RS26070 0.44 -0.5 20,937 + LU632_RS26070 0.44 -0.9 20,937 + LU632_RS26070 0.44 +1.4 20,937 + LU632_RS26070 0.44 -0.4 20,938 - LU632_RS26070 0.44 +1.6 20,959 + LU632_RS26070 0.45 +1.7 20,960 - LU632_RS26070 0.46 +0.8 20,960 - LU632_RS26070 0.46 +3.8 20,972 + LU632_RS26070 0.47 -2.2 20,972 + LU632_RS26070 0.47 -2.2 20,976 + LU632_RS26070 0.47 +3.1 20,977 - LU632_RS26070 0.47 +1.6 21,001 - LU632_RS26070 0.49 +1.0 21,001 - LU632_RS26070 0.49 +1.8 21,079 - LU632_RS26070 0.55 -1.2 21,079 - LU632_RS26070 0.55 -0.0 21,083 - LU632_RS26070 0.55 +0.7 21,083 - LU632_RS26070 0.55 -0.9 21,116 + LU632_RS26070 0.58 -0.1 21,117 - LU632_RS26070 0.58 -2.5 21,173 + LU632_RS26070 0.63 +2.2 21,173 + LU632_RS26070 0.63 +4.9
Or see this region's nucleotide sequence