Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22055

Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
4,210,726	+		LU632_RS22050	0.12	+1.3
4,210,726	+		LU632_RS22050	0.12	+1.0
4,210,726	+		LU632_RS22050	0.12	-0.2
4,210,726	+		LU632_RS22050	0.12	+2.7
4,210,727	-		LU632_RS22050	0.12	+2.1
4,210,779	+		LU632_RS22050	0.18	+0.2
4,210,952	+		LU632_RS22050	0.38	+1.4
4,210,952	+		LU632_RS22050	0.38	+0.0
4,210,953	+		LU632_RS22050	0.38	+0.9
4,211,088	-		LU632_RS22050	0.54	+1.1
4,211,198	+		LU632_RS22050	0.66	-0.1
4,211,199	-		LU632_RS22050	0.67	-1.1
4,211,217	+		LU632_RS22050	0.69	+0.9
4,211,241	+		LU632_RS22050	0.71	+3.7
4,211,241	+		LU632_RS22050	0.71	-1.4
4,211,242	-		LU632_RS22050	0.72	+1.2
4,211,242	-		LU632_RS22050	0.72	+2.2
4,211,242	-		LU632_RS22050	0.72	+1.3
4,211,258	+		LU632_RS22050	0.73	+1.8
4,211,259	-		LU632_RS22050	0.73	+1.3
4,211,259	-		LU632_RS22050	0.73	-0.4
4,211,308	+		LU632_RS22050	0.79	+1.9
4,211,308	+		LU632_RS22050	0.79	+1.3
4,211,309	-		LU632_RS22050	0.79	-0.7
4,211,309	-		LU632_RS22050	0.79	-1.0
4,211,310	+		LU632_RS22050	0.79	-0.6
4,211,311	-		LU632_RS22050	0.80	+0.2
4,211,355	+		LU632_RS22050	0.85	+1.3
4,211,382	+		LU632_RS22050	0.88	+0.1
4,211,551	-				+0.9
4,211,602	+				-1.0
4,211,621	-				+1.1
4,211,625	+				-1.9
4,211,648	+				-1.9
4,211,649	-				-0.6
4,211,654	+				+1.1
4,211,654	+				+0.7
4,211,656	+				+0.1
4,211,684	+				-0.2
4,211,688	+				+1.7
4,211,688	+				-0.8
4,211,688	+				+0.1
4,211,688	+				+0.0
4,211,689	-				-0.7
4,211,689	-				-1.2
4,211,690	+				+1.5
4,211,691	-				+0.3
4,211,790	+				-0.7
4,211,852	+		LU632_RS22055	0.12	+0.5
4,211,871	-		LU632_RS22055	0.13	-0.2
4,211,981	+		LU632_RS22055	0.22	+0.1
4,211,982	-		LU632_RS22055	0.23	+0.5
4,211,982	-		LU632_RS22055	0.23	-1.9
4,212,019	-		LU632_RS22055	0.26	+0.4
4,212,041	+		LU632_RS22055	0.27	-1.2
4,212,041	+		LU632_RS22055	0.27	+0.1
4,212,056	-		LU632_RS22055	0.29	+0.3
4,212,078	+		LU632_RS22055	0.31	+0.5
4,212,079	-		LU632_RS22055	0.31	+1.7
4,212,079	-		LU632_RS22055	0.31	-2.4
4,212,080	+		LU632_RS22055	0.31	-0.7
4,212,080	+		LU632_RS22055	0.31	+0.2
4,212,081	-		LU632_RS22055	0.31	+2.1
4,212,081	-		LU632_RS22055	0.31	-1.7
4,212,081	-		LU632_RS22055	0.31	-1.5
4,212,081	-		LU632_RS22055	0.31	+0.5
4,212,081	-		LU632_RS22055	0.31	-1.5
4,212,085	-		LU632_RS22055	0.31	-0.4
4,212,085	-		LU632_RS22055	0.31	+0.3
4,212,180	-		LU632_RS22055	0.39	-1.5
4,212,184	+		LU632_RS22055	0.39	-0.4
4,212,184	+		LU632_RS22055	0.39	+1.3
4,212,185	-		LU632_RS22055	0.39	-0.9
4,212,185	-		LU632_RS22055	0.39	+0.2
4,212,370	+		LU632_RS22055	0.55	+0.3
4,212,370	+		LU632_RS22055	0.55	-0.1
4,212,371	-		LU632_RS22055	0.55	+1.1
4,212,371	-		LU632_RS22055	0.55	+0.2
4,212,371	-		LU632_RS22055	0.55	-0.5
4,212,387	-		LU632_RS22055	0.56	-2.6
4,212,387	-		LU632_RS22055	0.56	+0.1
4,212,389	+		LU632_RS22055	0.56	+2.2
4,212,389	+		LU632_RS22055	0.56	+0.3
4,212,390	-		LU632_RS22055	0.56	-0.4
4,212,392	+		LU632_RS22055	0.57	+1.2
4,212,419	+		LU632_RS22055	0.59	-0.1
4,212,419	+		LU632_RS22055	0.59	+0.3
4,212,575	-		LU632_RS22055	0.72	+0.5
4,212,575	-		LU632_RS22055	0.72	-1.1
4,212,629	+		LU632_RS22055	0.76	+1.5
4,212,629	+		LU632_RS22055	0.76	+1.7
4,212,630	-		LU632_RS22055	0.76	-1.8
4,212,693	-		LU632_RS22055	0.82	+3.8
4,212,700	-		LU632_RS22055	0.82	-1.9
4,212,709	+		LU632_RS22055	0.83	-0.2
4,212,749	+		LU632_RS22055	0.86	-2.0
4,212,827	-				-2.5
4,212,835	+				-0.8
4,212,835	+				+0.3
4,212,836	-				-0.4
4,212,836	-				+1.3
4,212,836	-				+2.7
4,212,941	+				-0.8
4,212,946	+				+0.8
4,213,049	+				-0.8
4,213,072	+				+1.5
4,213,318	+		LU632_RS22060	0.28	-1.0