Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS20170 and LU632_RS20175 overlap by 71 nucleotides LU632_RS20175 and LU632_RS20180 are separated by 203 nucleotides LU632_RS20180 and LU632_RS20185 are separated by 44 nucleotides LU632_RS20185 and LU632_RS20190 overlap by 4 nucleotides LU632_RS20190 and LU632_RS20195 are separated by 231 nucleotides
LU632_RS20165: LU632_RS20165 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,840,197 to 3,840,466
_RS20165
LU632_RS20170: LU632_RS20170 - four-carbon acid sugar kinase family protein, at 3,840,429 to 3,840,602
_RS20170
LU632_RS20175: LU632_RS20175 - hypothetical protein, at 3,840,532 to 3,840,822
_RS20175
LU632_RS20180: LU632_RS20180 - iron-containing alcohol dehydrogenase, at 3,841,026 to 3,841,418
_RS20180
LU632_RS20185: LU632_RS20185 - YhcH/YjgK/YiaL family protein, at 3,841,463 to 3,841,937
_RS20185
LU632_RS20190: LU632_RS20190 - SDR family oxidoreductase, at 3,841,934 to 3,842,591
_RS20190
LU632_RS20195: LU632_RS20195 - IS1 family transposase, at 3,842,823 to 3,843,326
_RS20195
Position (kb) 3841
3842 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3840.600 kb on + strand at 3840.603 kb on - strand, within LU632_RS20175 at 3840.864 kb on - strand at 3841.160 kb on + strand, within LU632_RS20180 at 3841.280 kb on - strand, within LU632_RS20180 at 3841.282 kb on + strand, within LU632_RS20180 at 3841.283 kb on - strand, within LU632_RS20180 at 3841.577 kb on - strand, within LU632_RS20185 at 3841.652 kb on - strand, within LU632_RS20185 at 3841.670 kb on + strand, within LU632_RS20185 at 3841.773 kb on + strand, within LU632_RS20185 at 3841.773 kb on + strand, within LU632_RS20185 at 3841.774 kb on - strand, within LU632_RS20185 at 3842.066 kb on - strand, within LU632_RS20190 at 3842.103 kb on + strand, within LU632_RS20190 at 3842.115 kb on + strand, within LU632_RS20190 at 3842.133 kb on + strand, within LU632_RS20190 at 3842.133 kb on + strand, within LU632_RS20190 at 3842.134 kb on - strand, within LU632_RS20190 at 3842.134 kb on - strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.220 kb on + strand, within LU632_RS20190 at 3842.224 kb on + strand, within LU632_RS20190 at 3842.225 kb on - strand, within LU632_RS20190 at 3842.336 kb on + strand, within LU632_RS20190 at 3842.397 kb on + strand, within LU632_RS20190 at 3842.397 kb on + strand, within LU632_RS20190 at 3842.397 kb on + strand, within LU632_RS20190 at 3842.398 kb on - strand, within LU632_RS20190 at 3842.484 kb on + strand, within LU632_RS20190 at 3842.485 kb on - strand, within LU632_RS20190 at 3842.485 kb on - strand, within LU632_RS20190 at 3842.486 kb on + strand, within LU632_RS20190 at 3842.487 kb on - strand, within LU632_RS20190 at 3842.589 kb on + strand at 3842.590 kb on - strand at 3842.596 kb on - strand at 3842.602 kb on + strand at 3842.647 kb on + strand at 3842.648 kb on - strand at 3842.648 kb on - strand at 3842.673 kb on + strand at 3842.720 kb on - strand at 3842.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS) remove 3,840,600 + -1.2 3,840,603 - LU632_RS20175 0.24 -3.4 3,840,864 - +0.1 3,841,160 + LU632_RS20180 0.34 -1.0 3,841,280 - LU632_RS20180 0.65 +0.6 3,841,282 + LU632_RS20180 0.65 +0.5 3,841,283 - LU632_RS20180 0.65 +2.6 3,841,577 - LU632_RS20185 0.24 -2.3 3,841,652 - LU632_RS20185 0.40 +1.2 3,841,670 + LU632_RS20185 0.44 -1.8 3,841,773 + LU632_RS20185 0.65 -0.3 3,841,773 + LU632_RS20185 0.65 +3.1 3,841,774 - LU632_RS20185 0.65 +1.2 3,842,066 - LU632_RS20190 0.20 -1.5 3,842,103 + LU632_RS20190 0.26 +1.5 3,842,115 + LU632_RS20190 0.28 +1.0 3,842,133 + LU632_RS20190 0.30 -0.6 3,842,133 + LU632_RS20190 0.30 -0.3 3,842,134 - LU632_RS20190 0.30 +1.3 3,842,134 - LU632_RS20190 0.30 +1.0 3,842,220 + LU632_RS20190 0.43 +1.0 3,842,220 + LU632_RS20190 0.43 +2.4 3,842,220 + LU632_RS20190 0.43 +0.0 3,842,220 + LU632_RS20190 0.43 -2.0 3,842,224 + LU632_RS20190 0.44 +0.0 3,842,225 - LU632_RS20190 0.44 +0.5 3,842,336 + LU632_RS20190 0.61 +2.6 3,842,397 + LU632_RS20190 0.70 +0.2 3,842,397 + LU632_RS20190 0.70 -1.3 3,842,397 + LU632_RS20190 0.70 -0.2 3,842,398 - LU632_RS20190 0.71 +2.0 3,842,484 + LU632_RS20190 0.84 +0.4 3,842,485 - LU632_RS20190 0.84 +0.2 3,842,485 - LU632_RS20190 0.84 +1.0 3,842,486 + LU632_RS20190 0.84 -3.8 3,842,487 - LU632_RS20190 0.84 -2.2 3,842,589 + +0.7 3,842,590 - +1.0 3,842,596 - -1.5 3,842,602 + +1.2 3,842,647 + -1.0 3,842,648 - +1.5 3,842,648 - -0.2 3,842,673 + -2.8 3,842,720 - -1.6 3,842,722 - -0.5
Or see this region's nucleotide sequence