Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19715

Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
3,744,710	-	glpX	LU632_RS19710	0.20	-0.6
3,744,710	-	glpX	LU632_RS19710	0.20	-0.0
3,744,710	-	glpX	LU632_RS19710	0.20	+0.6
3,744,754	-	glpX	LU632_RS19710	0.24	-0.7
3,744,778	-	glpX	LU632_RS19710	0.26	+0.1
3,744,865	+	glpX	LU632_RS19710	0.35	-0.7
3,744,865	+	glpX	LU632_RS19710	0.35	+1.6
3,744,865	+	glpX	LU632_RS19710	0.35	-0.4
3,744,865	+	glpX	LU632_RS19710	0.35	-0.6
3,744,865	+	glpX	LU632_RS19710	0.35	+1.0
3,744,865	+	glpX	LU632_RS19710	0.35	-1.7
3,744,866	-	glpX	LU632_RS19710	0.35	-1.7
3,744,866	-	glpX	LU632_RS19710	0.35	-1.2
3,744,866	-	glpX	LU632_RS19710	0.35	+1.0
3,744,866	-	glpX	LU632_RS19710	0.35	-1.3
3,744,866	-	glpX	LU632_RS19710	0.35	-0.8
3,744,866	-	glpX	LU632_RS19710	0.35	-2.8
3,744,866	-	glpX	LU632_RS19710	0.35	-0.0
3,744,866	-	glpX	LU632_RS19710	0.35	+1.0
3,744,934	-	glpX	LU632_RS19710	0.42	+0.8
3,744,946	-	glpX	LU632_RS19710	0.43	-0.1
3,745,127	-	glpX	LU632_RS19710	0.61	-1.4
3,745,132	-	glpX	LU632_RS19710	0.61	+1.0
3,745,154	+	glpX	LU632_RS19710	0.64	-0.4
3,745,477	+				+1.0
3,745,511	-				+2.0
3,745,513	-				-1.5
3,745,513	-				+0.8
3,745,620	-				-2.4
3,745,663	+				-2.6
3,745,664	-				+0.4
3,745,664	-				+0.2
3,745,664	-				-0.2
3,745,664	-				-1.1
3,745,667	+				-0.8
3,745,668	-				-0.0
3,745,689	+				-0.2
3,745,787	+	fpr	LU632_RS19715	0.11	+2.7
3,745,787	+	fpr	LU632_RS19715	0.11	-0.6
3,745,833	-	fpr	LU632_RS19715	0.17	-1.2
3,745,900	+	fpr	LU632_RS19715	0.26	-0.4
3,746,065	+	fpr	LU632_RS19715	0.48	-1.9
3,746,066	-	fpr	LU632_RS19715	0.48	-1.2
3,746,066	-	fpr	LU632_RS19715	0.48	-0.5
3,746,075	+	fpr	LU632_RS19715	0.50	-0.7
3,746,078	+	fpr	LU632_RS19715	0.50	+0.8
3,746,188	+	fpr	LU632_RS19715	0.65	-0.2
3,746,201	+	fpr	LU632_RS19715	0.66	-1.6
3,746,201	+	fpr	LU632_RS19715	0.66	-0.0
3,746,205	+	fpr	LU632_RS19715	0.67	+0.3
3,746,308	-	fpr	LU632_RS19715	0.81	+3.0
3,746,328	+	fpr	LU632_RS19715	0.83	-3.2
3,746,328	+	fpr	LU632_RS19715	0.83	+1.0
3,746,331	+	fpr	LU632_RS19715	0.84	-0.4
3,746,331	+	fpr	LU632_RS19715	0.84	-1.2
3,746,331	+	fpr	LU632_RS19715	0.84	-0.5
3,746,331	+	fpr	LU632_RS19715	0.84	-0.6
3,746,331	+	fpr	LU632_RS19715	0.84	+2.0
3,746,332	-	fpr	LU632_RS19715	0.84	+0.5
3,746,332	-	fpr	LU632_RS19715	0.84	-0.4
3,746,332	-	fpr	LU632_RS19715	0.84	+0.6
3,746,332	-	fpr	LU632_RS19715	0.84	-3.1
3,746,337	-	fpr	LU632_RS19715	0.85	-0.6
3,746,376	-	fpr	LU632_RS19715	0.90	+0.4
3,746,410	-				-0.6
3,746,428	-				+0.1
3,746,444	-				-2.5
3,746,444	-				-0.6
3,746,449	+				-0.9
3,746,473	+				+0.2
3,746,473	+				-0.4
3,746,499	+		LU632_RS19720	0.11	-0.9
3,746,669	+		LU632_RS19720	0.52	-2.0
3,746,670	-		LU632_RS19720	0.52	+0.2
3,746,755	-		LU632_RS19720	0.73	-0.3
3,746,997	-				-0.1
3,747,136	+		LU632_RS19725	0.25	+1.9
3,747,245	-		LU632_RS19725	0.44	+1.9
3,747,282	+		LU632_RS19725	0.51	-0.2
3,747,355	+		LU632_RS19725	0.64	+1.2
3,747,355	+		LU632_RS19725	0.64	+0.1
3,747,355	+		LU632_RS19725	0.64	-0.6
3,747,355	+		LU632_RS19725	0.64	-0.1
3,747,393	-		LU632_RS19725	0.70	-0.4
3,747,393	-		LU632_RS19725	0.70	-0.6