Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17495

Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
3,288,703	+		LU632_RS17485	0.81	+0.3
3,288,703	+		LU632_RS17485	0.81	-1.0
3,288,704	-		LU632_RS17485	0.82	+0.3
3,288,746	+				-1.9
3,288,750	+				-1.0
3,288,750	+				-1.6
3,288,750	+				-0.2
3,288,779	+				+1.1
3,288,780	-				-2.2
3,288,782	+				+0.5
3,288,783	-				-2.6
3,288,783	-				+0.8
3,288,783	-				+0.3
3,288,785	-				-0.2
3,288,804	-				-0.5
3,288,831	+				+0.3
3,288,832	-				+1.3
3,288,847	+				+1.0
3,288,849	+				+0.5
3,289,158	+	yeiP	LU632_RS17490	0.57	+3.2
3,289,158	+	yeiP	LU632_RS17490	0.57	-1.0
3,289,159	-	yeiP	LU632_RS17490	0.57	-0.5
3,289,159	-	yeiP	LU632_RS17490	0.57	-0.2
3,289,159	-	yeiP	LU632_RS17490	0.57	-0.2
3,289,176	+	yeiP	LU632_RS17490	0.60	-0.2
3,289,285	+	yeiP	LU632_RS17490	0.79	+0.8
3,289,285	+	yeiP	LU632_RS17490	0.79	-0.7
3,289,286	-	yeiP	LU632_RS17490	0.80	-0.7
3,289,286	-	yeiP	LU632_RS17490	0.80	-0.7
3,289,287	+	yeiP	LU632_RS17490	0.80	+2.3
3,289,287	+	yeiP	LU632_RS17490	0.80	+1.4
3,289,405	+				-1.1
3,289,405	+				-1.2
3,289,502	-				-0.3
3,289,538	+				-1.0
3,289,558	+				-0.0
3,289,576	+				-0.2
3,289,577	-				-0.4
3,289,577	-				+0.5
3,289,593	+				+0.3
3,289,593	+				-1.3
3,289,594	-				-1.7
3,289,622	+		LU632_RS17495	0.25	-1.9
3,289,623	-		LU632_RS17495	0.26	-0.2
3,289,623	-		LU632_RS17495	0.26	-2.5
3,289,686	+		LU632_RS17495	0.74	+0.3
3,289,689	-		LU632_RS17495	0.77	+1.0
3,289,689	-		LU632_RS17495	0.77	+1.0
3,289,755	+				-2.2
3,289,755	+				-1.3
3,289,755	+				-2.5
3,289,756	-				+1.8
3,289,756	-				+0.1
3,289,863	-		LU632_RS17500	0.42	+4.5
3,289,935	+		LU632_RS17500	0.71	+0.3
3,290,002	+				+2.0