Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vgrG and LU632_RS03905 overlap by 4 nucleotides LU632_RS03905 and LU632_RS03910 are separated by 3 nucleotides
LU632_RS03900: vgrG - type VI secretion system tip protein VgrG, at 781,439 to 783,370
vgrG
LU632_RS03905: LU632_RS03905 - DUF1795 domain-containing protein, at 783,367 to 783,798
_RS03905
LU632_RS03910: LU632_RS03910 - DUF6531 domain-containing protein, at 783,802 to 787,896
_RS03910
Position (kb) 783
784 Strain fitness (log2 ratio) -2
-1
0
1
2 at 782.387 kb on + strand, within vgrG at 782.388 kb on - strand, within vgrG at 782.408 kb on + strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.474 kb on - strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.594 kb on + strand, within vgrG at 782.595 kb on - strand, within vgrG at 782.740 kb on - strand, within vgrG at 782.747 kb on - strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.790 kb on - strand, within vgrG at 782.954 kb on - strand, within vgrG at 783.093 kb on - strand, within vgrG at 783.271 kb on + strand at 783.347 kb on - strand at 783.520 kb on + strand, within LU632_RS03905 at 783.521 kb on - strand, within LU632_RS03905 at 783.895 kb on + strand at 783.908 kb on + strand at 783.966 kb on - strand at 784.105 kb on - strand at 784.105 kb on - strand at 784.324 kb on + strand, within LU632_RS03910 at 784.337 kb on + strand, within LU632_RS03910 at 784.338 kb on - strand, within LU632_RS03910 at 784.401 kb on + strand, within LU632_RS03910 at 784.404 kb on + strand, within LU632_RS03910 at 784.405 kb on - strand, within LU632_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS) remove 782,387 + vgrG LU632_RS03900 0.49 +0.1 782,388 - vgrG LU632_RS03900 0.49 -1.3 782,408 + vgrG LU632_RS03900 0.50 -1.9 782,409 - vgrG LU632_RS03900 0.50 -1.4 782,409 - vgrG LU632_RS03900 0.50 -2.0 782,429 + vgrG LU632_RS03900 0.51 +1.2 782,429 + vgrG LU632_RS03900 0.51 -0.7 782,474 - vgrG LU632_RS03900 0.54 -1.1 782,498 + vgrG LU632_RS03900 0.55 -0.9 782,498 + vgrG LU632_RS03900 0.55 -1.5 782,594 + vgrG LU632_RS03900 0.60 -0.2 782,595 - vgrG LU632_RS03900 0.60 -2.2 782,740 - vgrG LU632_RS03900 0.67 +0.0 782,747 - vgrG LU632_RS03900 0.68 +0.8 782,789 + vgrG LU632_RS03900 0.70 +0.7 782,789 + vgrG LU632_RS03900 0.70 -2.6 782,790 - vgrG LU632_RS03900 0.70 +2.1 782,954 - vgrG LU632_RS03900 0.78 -1.4 783,093 - vgrG LU632_RS03900 0.86 +1.3 783,271 + -1.0 783,347 - +1.1 783,520 + LU632_RS03905 0.35 -0.5 783,521 - LU632_RS03905 0.36 -0.1 783,895 + -1.5 783,908 + -0.4 783,966 - -1.2 784,105 - -1.5 784,105 - -0.1 784,324 + LU632_RS03910 0.13 -0.4 784,337 + LU632_RS03910 0.13 -1.9 784,338 - LU632_RS03910 0.13 -1.2 784,401 + LU632_RS03910 0.15 +0.4 784,404 + LU632_RS03910 0.15 +0.3 784,405 - LU632_RS03910 0.15 +2.0
Or see this region's nucleotide sequence