Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03785 and tssM are separated by 3 nucleotides tssM and tagF are separated by 16 nucleotides tagF and tssA are separated by 15 nucleotides
LU632_RS03785: LU632_RS03785 - DotU family type VI secretion system protein, at 752,625 to 753,860
_RS03785
LU632_RS03790: tssM - type VI secretion system membrane subunit TssM, at 753,864 to 757,487
tssM
LU632_RS03795: tagF - type VI secretion system-associated protein TagF, at 757,504 to 758,217
tagF
LU632_RS03800: tssA - type VI secretion system protein TssA, at 758,233 to 759,252
tssA
Position (kb) 753
754
755
756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 753.045 kb on + strand, within LU632_RS03785 at 753.045 kb on + strand, within LU632_RS03785 at 753.046 kb on - strand, within LU632_RS03785 at 753.046 kb on - strand, within LU632_RS03785 at 753.130 kb on + strand, within LU632_RS03785 at 753.131 kb on - strand, within LU632_RS03785 at 753.276 kb on + strand, within LU632_RS03785 at 753.277 kb on - strand, within LU632_RS03785 at 753.277 kb on - strand, within LU632_RS03785 at 753.529 kb on - strand, within LU632_RS03785 at 753.642 kb on + strand, within LU632_RS03785 at 753.642 kb on + strand, within LU632_RS03785 at 753.643 kb on - strand, within LU632_RS03785 at 753.793 kb on + strand at 753.800 kb on + strand at 753.872 kb on + strand at 753.923 kb on + strand at 753.938 kb on + strand at 753.939 kb on - strand at 753.939 kb on - strand at 754.000 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.029 kb on + strand at 754.030 kb on - strand at 754.030 kb on - strand at 754.031 kb on + strand at 754.069 kb on - strand at 754.273 kb on - strand, within tssM at 754.287 kb on + strand, within tssM at 754.287 kb on + strand, within tssM at 754.288 kb on - strand, within tssM at 754.288 kb on - strand, within tssM at 754.288 kb on - strand, within tssM at 754.463 kb on + strand, within tssM at 754.464 kb on - strand, within tssM at 754.508 kb on + strand, within tssM at 754.529 kb on + strand, within tssM at 754.529 kb on + strand, within tssM at 754.530 kb on - strand, within tssM at 754.842 kb on + strand, within tssM at 754.843 kb on - strand, within tssM at 755.035 kb on - strand, within tssM at 755.102 kb on - strand, within tssM at 755.177 kb on + strand, within tssM at 755.333 kb on - strand, within tssM at 755.333 kb on - strand, within tssM at 755.367 kb on + strand, within tssM at 755.368 kb on - strand, within tssM at 755.423 kb on - strand, within tssM at 755.510 kb on + strand, within tssM at 755.511 kb on - strand, within tssM at 755.511 kb on - strand, within tssM at 755.598 kb on - strand, within tssM at 755.649 kb on - strand, within tssM at 755.649 kb on - strand, within tssM at 755.674 kb on - strand, within tssM at 755.709 kb on + strand, within tssM at 755.762 kb on + strand, within tssM at 755.833 kb on + strand, within tssM at 755.834 kb on - strand, within tssM at 755.884 kb on - strand, within tssM at 756.088 kb on - strand, within tssM at 756.216 kb on + strand, within tssM at 756.216 kb on + strand, within tssM at 756.216 kb on + strand, within tssM at 756.217 kb on - strand, within tssM at 756.228 kb on + strand, within tssM at 756.264 kb on - strand, within tssM at 756.366 kb on + strand, within tssM at 756.366 kb on + strand, within tssM at 756.367 kb on - strand, within tssM at 756.367 kb on - strand, within tssM at 756.743 kb on + strand, within tssM at 756.743 kb on + strand, within tssM at 756.744 kb on - strand, within tssM at 756.744 kb on - strand, within tssM at 756.809 kb on + strand, within tssM at 757.026 kb on - strand, within tssM at 757.026 kb on - strand, within tssM at 757.296 kb on - strand at 757.296 kb on - strand at 757.877 kb on + strand, within tagF at 757.877 kb on + strand, within tagF at 758.059 kb on + strand, within tagF at 758.059 kb on + strand, within tagF at 758.059 kb on + strand, within tagF at 758.060 kb on - strand, within tagF at 758.060 kb on - strand, within tagF at 758.065 kb on - strand, within tagF at 758.065 kb on - strand, within tagF at 758.065 kb on - strand, within tagF at 758.104 kb on + strand, within tagF at 758.104 kb on + strand, within tagF at 758.104 kb on + strand, within tagF at 758.105 kb on - strand, within tagF at 758.105 kb on - strand, within tagF at 758.107 kb on - strand, within tagF at 758.225 kb on + strand at 758.226 kb on - strand at 758.238 kb on + strand at 758.239 kb on - strand at 758.239 kb on - strand at 758.296 kb on + strand at 758.297 kb on - strand at 758.297 kb on - strand at 758.297 kb on - strand at 758.308 kb on + strand at 758.308 kb on + strand at 758.308 kb on + strand at 758.309 kb on - strand at 758.309 kb on - strand at 758.309 kb on - strand at 758.309 kb on - strand at 758.399 kb on + strand, within tssA at 758.400 kb on - strand, within tssA at 758.400 kb on - strand, within tssA at 758.480 kb on + strand, within tssA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS) remove 753,045 + LU632_RS03785 0.34 -0.7 753,045 + LU632_RS03785 0.34 -0.5 753,046 - LU632_RS03785 0.34 -1.5 753,046 - LU632_RS03785 0.34 +0.3 753,130 + LU632_RS03785 0.41 -2.6 753,131 - LU632_RS03785 0.41 +3.1 753,276 + LU632_RS03785 0.53 +3.2 753,277 - LU632_RS03785 0.53 -2.2 753,277 - LU632_RS03785 0.53 +1.9 753,529 - LU632_RS03785 0.73 -1.7 753,642 + LU632_RS03785 0.82 -1.1 753,642 + LU632_RS03785 0.82 -2.5 753,643 - LU632_RS03785 0.82 +0.5 753,793 + -0.7 753,800 + +2.3 753,872 + -2.8 753,923 + +0.3 753,938 + +0.7 753,939 - -0.4 753,939 - -0.1 754,000 + +1.9 754,029 + -0.1 754,029 + -3.0 754,029 + +0.8 754,029 + +1.9 754,029 + -2.6 754,030 - -2.2 754,030 - +3.0 754,031 + -1.0 754,069 - -1.3 754,273 - tssM LU632_RS03790 0.11 -2.0 754,287 + tssM LU632_RS03790 0.12 -0.8 754,287 + tssM LU632_RS03790 0.12 +0.7 754,288 - tssM LU632_RS03790 0.12 +1.1 754,288 - tssM LU632_RS03790 0.12 +0.4 754,288 - tssM LU632_RS03790 0.12 -0.9 754,463 + tssM LU632_RS03790 0.17 -0.3 754,464 - tssM LU632_RS03790 0.17 -0.5 754,508 + tssM LU632_RS03790 0.18 -1.6 754,529 + tssM LU632_RS03790 0.18 +1.3 754,529 + tssM LU632_RS03790 0.18 +0.1 754,530 - tssM LU632_RS03790 0.18 -1.0 754,842 + tssM LU632_RS03790 0.27 +0.3 754,843 - tssM LU632_RS03790 0.27 -1.4 755,035 - tssM LU632_RS03790 0.32 -2.2 755,102 - tssM LU632_RS03790 0.34 +1.9 755,177 + tssM LU632_RS03790 0.36 -1.1 755,333 - tssM LU632_RS03790 0.41 +2.6 755,333 - tssM LU632_RS03790 0.41 +1.0 755,367 + tssM LU632_RS03790 0.41 -1.9 755,368 - tssM LU632_RS03790 0.42 -0.7 755,423 - tssM LU632_RS03790 0.43 -3.0 755,510 + tssM LU632_RS03790 0.45 +0.9 755,511 - tssM LU632_RS03790 0.45 -2.1 755,511 - tssM LU632_RS03790 0.45 +0.4 755,598 - tssM LU632_RS03790 0.48 +0.2 755,649 - tssM LU632_RS03790 0.49 -0.9 755,649 - tssM LU632_RS03790 0.49 -0.7 755,674 - tssM LU632_RS03790 0.50 -2.2 755,709 + tssM LU632_RS03790 0.51 +0.9 755,762 + tssM LU632_RS03790 0.52 -0.1 755,833 + tssM LU632_RS03790 0.54 -0.4 755,834 - tssM LU632_RS03790 0.54 -0.4 755,884 - tssM LU632_RS03790 0.56 +0.2 756,088 - tssM LU632_RS03790 0.61 -2.1 756,216 + tssM LU632_RS03790 0.65 -0.7 756,216 + tssM LU632_RS03790 0.65 -1.7 756,216 + tssM LU632_RS03790 0.65 +0.1 756,217 - tssM LU632_RS03790 0.65 +2.3 756,228 + tssM LU632_RS03790 0.65 -1.7 756,264 - tssM LU632_RS03790 0.66 +1.1 756,366 + tssM LU632_RS03790 0.69 +3.3 756,366 + tssM LU632_RS03790 0.69 -0.3 756,367 - tssM LU632_RS03790 0.69 -1.1 756,367 - tssM LU632_RS03790 0.69 +0.3 756,743 + tssM LU632_RS03790 0.79 -1.8 756,743 + tssM LU632_RS03790 0.79 +0.4 756,744 - tssM LU632_RS03790 0.79 +0.3 756,744 - tssM LU632_RS03790 0.79 +1.0 756,809 + tssM LU632_RS03790 0.81 -0.6 757,026 - tssM LU632_RS03790 0.87 -2.8 757,026 - tssM LU632_RS03790 0.87 -0.5 757,296 - +0.2 757,296 - +1.5 757,877 + tagF LU632_RS03795 0.52 -0.1 757,877 + tagF LU632_RS03795 0.52 -0.5 758,059 + tagF LU632_RS03795 0.78 +0.2 758,059 + tagF LU632_RS03795 0.78 +0.9 758,059 + tagF LU632_RS03795 0.78 -2.5 758,060 - tagF LU632_RS03795 0.78 -1.3 758,060 - tagF LU632_RS03795 0.78 -0.3 758,065 - tagF LU632_RS03795 0.79 +0.7 758,065 - tagF LU632_RS03795 0.79 -0.4 758,065 - tagF LU632_RS03795 0.79 -1.7 758,104 + tagF LU632_RS03795 0.84 -1.1 758,104 + tagF LU632_RS03795 0.84 -0.9 758,104 + tagF LU632_RS03795 0.84 -3.2 758,105 - tagF LU632_RS03795 0.84 +0.4 758,105 - tagF LU632_RS03795 0.84 +0.9 758,107 - tagF LU632_RS03795 0.84 -0.8 758,225 + -0.4 758,226 - -2.1 758,238 + +0.9 758,239 - +0.0 758,239 - -1.3 758,296 + -0.1 758,297 - -1.0 758,297 - +1.4 758,297 - +0.3 758,308 + -1.0 758,308 + +0.6 758,308 + -0.7 758,309 - +1.0 758,309 - -1.3 758,309 - +0.9 758,309 - +0.9 758,399 + tssA LU632_RS03800 0.16 +2.6 758,400 - tssA LU632_RS03800 0.16 +0.5 758,400 - tssA LU632_RS03800 0.16 -0.9 758,480 + tssA LU632_RS03800 0.24 -0.6
Or see this region's nucleotide sequence