Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01305

Experiment: Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01295 and LU632_RS01300 are separated by 9 nucleotidesLU632_RS01300 and LU632_RS01305 overlap by 4 nucleotidesLU632_RS01305 and LU632_RS01310 are separated by 160 nucleotidesLU632_RS01310 and LU632_RS01315 are separated by 69 nucleotides LU632_RS01295: LU632_RS01295 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 269,047 to 269,703 _RS01295 LU632_RS01300: LU632_RS01300 - L-ribulose-5-phosphate 3-epimerase, at 269,713 to 270,573 _RS01300 LU632_RS01305: LU632_RS01305 - L-ribulose-5-phosphate 4-epimerase, at 270,570 to 271,259 _RS01305 LU632_RS01310: LU632_RS01310 - hypothetical protein, at 271,420 to 271,842 _RS01310 LU632_RS01315: LU632_RS01315 - IS110 family transposase, at 271,912 to 272,647 _RS01315 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 269.606 kb on + strand, within LU632_RS01295at 269.607 kb on - strand, within LU632_RS01295at 269.743 kb on + strandat 269.743 kb on + strandat 269.911 kb on - strand, within LU632_RS01300at 270.006 kb on + strand, within LU632_RS01300at 270.007 kb on - strand, within LU632_RS01300at 270.007 kb on - strand, within LU632_RS01300at 270.232 kb on + strand, within LU632_RS01300at 270.330 kb on + strand, within LU632_RS01300at 270.330 kb on + strand, within LU632_RS01300at 270.330 kb on + strand, within LU632_RS01300at 270.330 kb on + strand, within LU632_RS01300at 270.330 kb on + strand, within LU632_RS01300at 270.331 kb on - strand, within LU632_RS01300at 270.331 kb on - strand, within LU632_RS01300at 270.331 kb on - strand, within LU632_RS01300at 270.331 kb on - strand, within LU632_RS01300at 270.331 kb on - strand, within LU632_RS01300at 270.331 kb on - strand, within LU632_RS01300at 270.354 kb on + strand, within LU632_RS01300at 270.605 kb on + strandat 270.605 kb on + strandat 270.608 kb on + strandat 270.609 kb on - strandat 270.609 kb on - strandat 270.816 kb on + strand, within LU632_RS01305at 270.851 kb on + strand, within LU632_RS01305at 270.852 kb on - strand, within LU632_RS01305at 270.927 kb on + strand, within LU632_RS01305at 270.962 kb on - strand, within LU632_RS01305at 270.962 kb on - strand, within LU632_RS01305at 271.046 kb on + strand, within LU632_RS01305at 271.112 kb on - strand, within LU632_RS01305at 271.197 kb on + strandat 271.197 kb on + strandat 271.198 kb on - strandat 271.201 kb on + strandat 271.242 kb on + strandat 271.243 kb on - strandat 271.245 kb on + strandat 271.246 kb on - strandat 271.274 kb on - strandat 271.450 kb on + strandat 271.451 kb on - strandat 271.452 kb on + strandat 271.491 kb on + strand, within LU632_RS01310at 271.491 kb on + strand, within LU632_RS01310at 271.492 kb on - strand, within LU632_RS01310at 271.492 kb on - strand, within LU632_RS01310at 271.492 kb on - strand, within LU632_RS01310at 271.492 kb on - strand, within LU632_RS01310at 271.498 kb on + strand, within LU632_RS01310at 271.541 kb on + strand, within LU632_RS01310at 271.541 kb on + strand, within LU632_RS01310at 271.541 kb on + strand, within LU632_RS01310at 271.567 kb on + strand, within LU632_RS01310at 271.568 kb on - strand, within LU632_RS01310at 271.568 kb on - strand, within LU632_RS01310at 271.776 kb on + strand, within LU632_RS01310at 271.776 kb on + strand, within LU632_RS01310at 271.776 kb on + strand, within LU632_RS01310at 271.777 kb on - strand, within LU632_RS01310at 271.777 kb on - strand, within LU632_RS01310at 271.828 kb on - strandat 271.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Main Stem (TE2-S-C1-MS)
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269,606 + LU632_RS01295 0.85 -3.0
269,607 - LU632_RS01295 0.85 +0.3
269,743 + +0.0
269,743 + +1.2
269,911 - LU632_RS01300 0.23 +0.7
270,006 + LU632_RS01300 0.34 +1.1
270,007 - LU632_RS01300 0.34 +0.8
270,007 - LU632_RS01300 0.34 +1.8
270,232 + LU632_RS01300 0.60 +2.4
270,330 + LU632_RS01300 0.72 +0.9
270,330 + LU632_RS01300 0.72 -0.9
270,330 + LU632_RS01300 0.72 +0.5
270,330 + LU632_RS01300 0.72 -1.3
270,330 + LU632_RS01300 0.72 -0.0
270,331 - LU632_RS01300 0.72 -1.5
270,331 - LU632_RS01300 0.72 -1.8
270,331 - LU632_RS01300 0.72 +0.1
270,331 - LU632_RS01300 0.72 -0.3
270,331 - LU632_RS01300 0.72 +2.6
270,331 - LU632_RS01300 0.72 +0.3
270,354 + LU632_RS01300 0.74 -0.5
270,605 + -0.1
270,605 + +4.1
270,608 + +3.1
270,609 - -1.4
270,609 - -0.3
270,816 + LU632_RS01305 0.36 -1.9
270,851 + LU632_RS01305 0.41 +1.1
270,852 - LU632_RS01305 0.41 -0.9
270,927 + LU632_RS01305 0.52 -0.4
270,962 - LU632_RS01305 0.57 -1.6
270,962 - LU632_RS01305 0.57 -1.0
271,046 + LU632_RS01305 0.69 -0.7
271,112 - LU632_RS01305 0.79 -0.9
271,197 + -1.9
271,197 + -3.1
271,198 - -2.3
271,201 + +0.5
271,242 + -1.4
271,243 - -0.2
271,245 + -0.3
271,246 - -0.5
271,274 - -1.7
271,450 + +0.5
271,451 - -1.3
271,452 + +0.5
271,491 + LU632_RS01310 0.17 +1.2
271,491 + LU632_RS01310 0.17 +2.1
271,492 - LU632_RS01310 0.17 +0.7
271,492 - LU632_RS01310 0.17 +1.6
271,492 - LU632_RS01310 0.17 +2.1
271,492 - LU632_RS01310 0.17 -2.2
271,498 + LU632_RS01310 0.18 +0.5
271,541 + LU632_RS01310 0.29 +1.5
271,541 + LU632_RS01310 0.29 +0.8
271,541 + LU632_RS01310 0.29 +0.8
271,567 + LU632_RS01310 0.35 -0.3
271,568 - LU632_RS01310 0.35 -0.0
271,568 - LU632_RS01310 0.35 +2.1
271,776 + LU632_RS01310 0.84 -0.9
271,776 + LU632_RS01310 0.84 +0.8
271,776 + LU632_RS01310 0.84 -0.4
271,777 - LU632_RS01310 0.84 +0.4
271,777 - LU632_RS01310 0.84 +0.7
271,828 - -0.5
271,930 - +2.1

Or see this region's nucleotide sequence