Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS17660 and HMPREF1181_RS16160 are separated by 75 nucleotides HMPREF1181_RS16160 and HMPREF1181_RS16165 are separated by 783 nucleotides
HMPREF1181_RS17660: HMPREF1181_RS17660 - GNAT family N-acetyltransferase, at 61,690 to 63,036
_RS17660
HMPREF1181_RS16160: HMPREF1181_RS16160 - hypothetical protein, at 63,112 to 63,540
_RS16160
HMPREF1181_RS16165: HMPREF1181_RS16165 - PH domain-containing protein, at 64,324 to 64,839
_RS16165
Position (kb) 63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 62.173 kb on + strand, within HMPREF1181_RS17660 at 62.196 kb on + strand, within HMPREF1181_RS17660 at 62.198 kb on + strand, within HMPREF1181_RS17660 at 62.211 kb on + strand, within HMPREF1181_RS17660 at 62.215 kb on + strand, within HMPREF1181_RS17660 at 62.216 kb on - strand, within HMPREF1181_RS17660 at 62.225 kb on + strand, within HMPREF1181_RS17660 at 62.225 kb on + strand, within HMPREF1181_RS17660 at 62.226 kb on - strand, within HMPREF1181_RS17660 at 62.226 kb on - strand, within HMPREF1181_RS17660 at 62.227 kb on + strand, within HMPREF1181_RS17660 at 62.296 kb on + strand, within HMPREF1181_RS17660 at 62.399 kb on + strand, within HMPREF1181_RS17660 at 62.400 kb on - strand, within HMPREF1181_RS17660 at 62.438 kb on - strand, within HMPREF1181_RS17660 at 62.440 kb on + strand, within HMPREF1181_RS17660 at 62.648 kb on - strand, within HMPREF1181_RS17660 at 62.738 kb on - strand, within HMPREF1181_RS17660 at 62.855 kb on - strand, within HMPREF1181_RS17660 at 62.911 kb on - strand at 62.911 kb on - strand at 62.926 kb on + strand at 62.927 kb on - strand at 63.024 kb on + strand at 63.024 kb on + strand at 63.024 kb on + strand at 63.025 kb on - strand at 63.025 kb on - strand at 63.025 kb on - strand at 63.025 kb on - strand at 63.029 kb on - strand at 63.029 kb on - strand at 63.029 kb on - strand at 63.029 kb on - strand at 63.029 kb on - strand at 63.060 kb on + strand at 63.064 kb on + strand at 63.065 kb on - strand at 63.108 kb on + strand at 63.129 kb on + strand at 63.129 kb on + strand at 63.130 kb on - strand at 63.132 kb on - strand at 63.169 kb on + strand, within HMPREF1181_RS16160 at 63.194 kb on + strand, within HMPREF1181_RS16160 at 63.195 kb on - strand, within HMPREF1181_RS16160 at 63.200 kb on - strand, within HMPREF1181_RS16160 at 63.236 kb on - strand, within HMPREF1181_RS16160 at 63.304 kb on + strand, within HMPREF1181_RS16160 at 63.305 kb on - strand, within HMPREF1181_RS16160 at 63.454 kb on + strand, within HMPREF1181_RS16160 at 63.458 kb on + strand, within HMPREF1181_RS16160 at 63.466 kb on + strand, within HMPREF1181_RS16160 at 63.467 kb on - strand, within HMPREF1181_RS16160 at 63.517 kb on + strand at 63.519 kb on + strand at 63.532 kb on + strand at 63.574 kb on + strand at 63.579 kb on - strand at 63.582 kb on + strand at 63.647 kb on - strand at 63.680 kb on + strand at 63.683 kb on - strand at 63.811 kb on - strand at 63.817 kb on + strand at 63.818 kb on - strand at 63.818 kb on - strand at 63.822 kb on + strand at 63.822 kb on + strand at 63.834 kb on + strand at 63.866 kb on - strand at 63.883 kb on - strand at 63.975 kb on + strand at 64.053 kb on - strand at 64.168 kb on - strand at 64.233 kb on + strand at 64.262 kb on + strand at 64.262 kb on + strand at 64.298 kb on + strand at 64.302 kb on - strand at 64.318 kb on + strand at 64.319 kb on - strand at 64.324 kb on - strand at 64.332 kb on + strand at 64.375 kb on - strand at 64.378 kb on + strand, within HMPREF1181_RS16165 at 64.379 kb on - strand, within HMPREF1181_RS16165 at 64.379 kb on - strand, within HMPREF1181_RS16165 at 64.380 kb on + strand, within HMPREF1181_RS16165 at 64.381 kb on - strand, within HMPREF1181_RS16165 at 64.400 kb on - strand, within HMPREF1181_RS16165 at 64.436 kb on - strand, within HMPREF1181_RS16165 at 64.506 kb on + strand, within HMPREF1181_RS16165
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 62,173 + HMPREF1181_RS17660 0.36 -0.0 62,196 + HMPREF1181_RS17660 0.38 +0.3 62,198 + HMPREF1181_RS17660 0.38 +1.1 62,211 + HMPREF1181_RS17660 0.39 +0.7 62,215 + HMPREF1181_RS17660 0.39 +0.1 62,216 - HMPREF1181_RS17660 0.39 +0.8 62,225 + HMPREF1181_RS17660 0.40 -1.3 62,225 + HMPREF1181_RS17660 0.40 -0.1 62,226 - HMPREF1181_RS17660 0.40 -1.1 62,226 - HMPREF1181_RS17660 0.40 +0.4 62,227 + HMPREF1181_RS17660 0.40 -0.3 62,296 + HMPREF1181_RS17660 0.45 -0.9 62,399 + HMPREF1181_RS17660 0.53 +0.9 62,400 - HMPREF1181_RS17660 0.53 -1.2 62,438 - HMPREF1181_RS17660 0.56 +0.2 62,440 + HMPREF1181_RS17660 0.56 +1.0 62,648 - HMPREF1181_RS17660 0.71 +0.8 62,738 - HMPREF1181_RS17660 0.78 -0.5 62,855 - HMPREF1181_RS17660 0.86 +1.0 62,911 - +2.1 62,911 - -2.5 62,926 + +0.6 62,927 - +0.3 63,024 + -0.3 63,024 + +1.4 63,024 + -1.4 63,025 - +0.8 63,025 - -1.4 63,025 - +1.4 63,025 - -0.3 63,029 - +0.2 63,029 - +0.7 63,029 - -0.2 63,029 - -1.4 63,029 - +0.7 63,060 + -0.2 63,064 + +0.1 63,065 - +1.6 63,108 + +0.9 63,129 + -1.4 63,129 + +0.8 63,130 - +0.1 63,132 - -0.0 63,169 + HMPREF1181_RS16160 0.13 +0.2 63,194 + HMPREF1181_RS16160 0.19 +1.3 63,195 - HMPREF1181_RS16160 0.19 +0.9 63,200 - HMPREF1181_RS16160 0.21 +1.3 63,236 - HMPREF1181_RS16160 0.29 -1.7 63,304 + HMPREF1181_RS16160 0.45 -1.5 63,305 - HMPREF1181_RS16160 0.45 +1.0 63,454 + HMPREF1181_RS16160 0.80 -1.9 63,458 + HMPREF1181_RS16160 0.81 +0.1 63,466 + HMPREF1181_RS16160 0.83 +0.6 63,467 - HMPREF1181_RS16160 0.83 -1.0 63,517 + -0.3 63,519 + +1.5 63,532 + +1.1 63,574 + -0.8 63,579 - +0.3 63,582 + -1.1 63,647 - +0.8 63,680 + -0.2 63,683 - +0.2 63,811 - +0.6 63,817 + -2.0 63,818 - +1.3 63,818 - -3.3 63,822 + +0.8 63,822 + -2.3 63,834 + +0.6 63,866 - +1.1 63,883 - -0.3 63,975 + -1.9 64,053 - -1.4 64,168 - -1.6 64,233 + +1.0 64,262 + -0.1 64,262 + +0.1 64,298 + +0.5 64,302 - +0.3 64,318 + +0.4 64,319 - -2.5 64,324 - -1.7 64,332 + +0.3 64,375 - -1.8 64,378 + HMPREF1181_RS16165 0.10 +1.1 64,379 - HMPREF1181_RS16165 0.11 -1.1 64,379 - HMPREF1181_RS16165 0.11 -0.3 64,380 + HMPREF1181_RS16165 0.11 -0.4 64,381 - HMPREF1181_RS16165 0.11 +0.6 64,400 - HMPREF1181_RS16165 0.15 +0.8 64,436 - HMPREF1181_RS16165 0.22 -1.6 64,506 + HMPREF1181_RS16165 0.35 -2.0
Or see this region's nucleotide sequence