Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS01705 and HMPREF1181_RS01710 are separated by 101 nucleotides HMPREF1181_RS01710 and HMPREF1181_RS01715 overlap by 1 nucleotides HMPREF1181_RS01715 and HMPREF1181_RS01720 are separated by 2 nucleotides
HMPREF1181_RS01705: HMPREF1181_RS01705 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 411,328 to 412,386
_RS01705
HMPREF1181_RS01710: HMPREF1181_RS01710 - tRNA pseudouridine(55) synthase TruB, at 412,488 to 413,198
_RS01710
HMPREF1181_RS01715: HMPREF1181_RS01715 - undecaprenyl-diphosphate phosphatase, at 413,198 to 414,052
_RS01715
HMPREF1181_RS01720: HMPREF1181_RS01720 - DUF3098 domain-containing protein, at 414,055 to 414,297
_RS01720
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 412.420 kb on - strand at 412.587 kb on - strand, within HMPREF1181_RS01710 at 412.587 kb on - strand, within HMPREF1181_RS01710 at 412.658 kb on - strand, within HMPREF1181_RS01710 at 412.837 kb on - strand, within HMPREF1181_RS01710 at 412.980 kb on - strand, within HMPREF1181_RS01710 at 413.022 kb on - strand, within HMPREF1181_RS01710 at 413.026 kb on - strand, within HMPREF1181_RS01710 at 413.026 kb on - strand, within HMPREF1181_RS01710 at 413.029 kb on - strand, within HMPREF1181_RS01710 at 413.029 kb on - strand, within HMPREF1181_RS01710 at 413.074 kb on - strand, within HMPREF1181_RS01710 at 414.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 412,420 - -0.1 412,587 - HMPREF1181_RS01710 0.14 -2.0 412,587 - HMPREF1181_RS01710 0.14 -3.1 412,658 - HMPREF1181_RS01710 0.24 -1.6 412,837 - HMPREF1181_RS01710 0.49 -0.2 412,980 - HMPREF1181_RS01710 0.69 +0.2 413,022 - HMPREF1181_RS01710 0.75 -0.2 413,026 - HMPREF1181_RS01710 0.76 -2.2 413,026 - HMPREF1181_RS01710 0.76 +0.3 413,029 - HMPREF1181_RS01710 0.76 +2.5 413,029 - HMPREF1181_RS01710 0.76 +0.1 413,074 - HMPREF1181_RS01710 0.82 -0.7 414,057 - -2.4
Or see this region's nucleotide sequence