Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20695

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
3,946,328	-				+0.1
3,946,351	-				-1.9
3,946,351	-				-1.4
3,946,413	+				-3.5
3,946,413	+				-1.6
3,946,473	-	bacA	LU632_RS20695	0.13	-2.3
3,946,555	-	bacA	LU632_RS20695	0.23	+0.2
3,946,555	-	bacA	LU632_RS20695	0.23	-3.8
3,946,821	+	bacA	LU632_RS20695	0.55	-3.7
3,946,822	-	bacA	LU632_RS20695	0.56	-1.4
3,946,822	-	bacA	LU632_RS20695	0.56	-2.8
3,947,098	+	bacA	LU632_RS20695	0.89	-2.8
3,947,099	-	bacA	LU632_RS20695	0.89	-1.8
3,947,178	-				-5.5
3,947,178	-				-2.4
3,947,190	+				-1.4
3,947,190	+				-1.6
3,947,191	-				-4.3
3,947,191	-				-4.6
3,947,191	-				-3.5
3,947,747	-				+1.8
3,947,798	+				-0.7
3,947,799	-				+1.6
3,947,799	-				-0.7
3,947,799	-				-1.4
3,947,807	-				-0.7
3,947,888	-	plsY	LU632_RS20705	0.15	-1.4
3,947,888	-	plsY	LU632_RS20705	0.15	-2.1
3,947,997	-	plsY	LU632_RS20705	0.33	-3.0
3,947,997	-	plsY	LU632_RS20705	0.33	-0.2
3,948,019	-	plsY	LU632_RS20705	0.37	+0.8
3,948,084	+	plsY	LU632_RS20705	0.48	-3.2