Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20000

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
3,804,310	-		LU632_RS19995	0.64	-0.9
3,804,399	+		LU632_RS19995	0.72	+0.8
3,804,651	+				+0.9
3,804,652	-				+0.2
3,804,716	+				+0.2
3,804,716	+				+0.8
3,804,716	+				-1.8
3,804,717	-				+1.6
3,804,749	+				-0.5
3,804,750	-				-0.4
3,804,769	+				-1.5
3,804,769	+				+3.0
3,804,832	+				-1.7
3,804,920	-				+1.4
3,805,021	+				+1.2
3,805,025	-				-2.2
3,805,100	-				-2.4
3,805,166	+				+1.4
3,805,199	+				-2.2
3,805,201	+				+0.9
3,805,201	+				+0.1
3,805,201	+				+0.8
3,805,201	+				+0.1
3,805,201	+				-0.9
3,805,201	+				+0.5
3,805,201	+				-2.1
3,805,201	+				-0.8
3,805,202	-				-2.1
3,805,202	-				+0.3
3,805,202	-				+0.7
3,805,202	-				-0.9
3,805,202	-				-2.2
3,805,202	-				-1.5
3,805,203	+				-2.3
3,805,203	+				-2.4
3,805,203	+				-1.2
3,805,203	+				+0.0
3,805,203	+				+1.1
3,805,203	+				+0.1
3,805,203	+				-1.5
3,805,203	+				-2.4
3,805,204	-				-0.9
3,805,204	-				-1.5
3,805,224	+				+0.5
3,805,400	+	degP	LU632_RS20000	0.15	-3.1
3,805,401	-	degP	LU632_RS20000	0.15	-3.2
3,805,408	-	degP	LU632_RS20000	0.16	-3.6
3,805,433	+	degP	LU632_RS20000	0.17	+0.4
3,805,434	-	degP	LU632_RS20000	0.18	-3.4
3,805,465	-	degP	LU632_RS20000	0.20	+0.4
3,806,746	-				-3.2
3,806,756	+				-2.1
3,806,757	-				+0.8
3,806,758	+				+1.6
3,806,758	+				-1.7
3,806,901	-				+1.6
3,806,906	+				+0.2
3,807,040	+	dgt	LU632_RS20005	0.18	+0.4
3,807,071	-	dgt	LU632_RS20005	0.20	-1.8
3,807,112	-	dgt	LU632_RS20005	0.23	+0.6
3,807,112	-	dgt	LU632_RS20005	0.23	-2.6
3,807,147	+	dgt	LU632_RS20005	0.25	+0.5
3,807,184	+	dgt	LU632_RS20005	0.28	-3.1
3,807,216	-	dgt	LU632_RS20005	0.30	-0.5
3,807,480	-	dgt	LU632_RS20005	0.47	+0.1
3,807,512	+	dgt	LU632_RS20005	0.49	+3.7
3,807,513	-	dgt	LU632_RS20005	0.50	-0.8
3,807,514	+	dgt	LU632_RS20005	0.50	-0.9
3,807,515	-	dgt	LU632_RS20005	0.50	+1.2
3,807,515	-	dgt	LU632_RS20005	0.50	+0.7
3,807,515	-	dgt	LU632_RS20005	0.50	+2.5
3,807,515	-	dgt	LU632_RS20005	0.50	+1.0
3,807,535	+	dgt	LU632_RS20005	0.51	+0.6
3,807,535	+	dgt	LU632_RS20005	0.51	+0.6
3,807,592	+	dgt	LU632_RS20005	0.55	+3.3