Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19980

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
3,798,991	+				+1.6
3,798,992	-				-0.4
3,799,191	+				-3.3
3,800,244	+	glnD	LU632_RS19980	0.40	-0.5
3,800,922	+	glnD	LU632_RS19980	0.66	-1.5
3,800,922	+	glnD	LU632_RS19980	0.66	-1.2
3,800,923	-	glnD	LU632_RS19980	0.66	-2.1
3,800,954	-	glnD	LU632_RS19980	0.67	-2.2
3,801,494	-	glnD	LU632_RS19980	0.87	+1.1
3,801,827	-				-0.4
3,801,845	-				+1.1
3,801,916	-				-3.3
3,802,755	-				-2.2