Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14425

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
2,748,874	+		LU632_RS14415	0.24	-3.1
2,748,875	-		LU632_RS14415	0.24	+2.6
2,749,093	+		LU632_RS14415	0.65	+0.5
2,749,238	+				+2.4
2,749,239	-				-1.7
2,749,239	-				-0.0
2,749,329	+		LU632_RS14420	0.11	+1.3
2,749,533	+		LU632_RS14420	0.61	+0.7
2,749,600	+		LU632_RS14420	0.77	+0.7
2,749,601	-		LU632_RS14420	0.77	-0.3
2,749,606	+		LU632_RS14420	0.78	-0.1
2,749,606	+		LU632_RS14420	0.78	+0.8
2,749,607	-		LU632_RS14420	0.79	-0.9
2,749,622	+		LU632_RS14420	0.82	-1.6
2,749,695	+				-2.4
2,749,696	-				+0.3
2,749,696	-				+0.1
2,749,827	-		LU632_RS14425	0.41	-1.7
2,749,827	-		LU632_RS14425	0.41	-0.3
2,749,835	-		LU632_RS14425	0.44	-3.0
2,749,889	+		LU632_RS14425	0.60	+0.9
2,749,889	+		LU632_RS14425	0.60	-1.5
2,749,890	-		LU632_RS14425	0.60	-0.8
2,749,971	-		LU632_RS14425	0.84	-2.1
2,750,092	+				-0.2
2,750,100	+				+1.2
2,750,100	+				-0.3
2,750,101	-				-1.6
2,750,101	-				-2.2
2,750,337	-		LU632_RS14430	0.13	+1.9
2,750,384	-		LU632_RS14430	0.17	-0.6
2,750,435	-		LU632_RS14430	0.22	+2.1
2,750,444	+		LU632_RS14430	0.23	+2.5
2,750,445	-		LU632_RS14430	0.23	+0.4
2,750,499	+		LU632_RS14430	0.28	+2.7
2,750,500	-		LU632_RS14430	0.28	-1.8
2,750,500	-		LU632_RS14430	0.28	-1.2
2,750,525	-		LU632_RS14430	0.31	+1.1
2,750,541	+		LU632_RS14430	0.32	-1.4
2,750,542	-		LU632_RS14430	0.32	+0.7
2,750,542	-		LU632_RS14430	0.32	-2.0
2,750,760	+		LU632_RS14430	0.53	-2.3
2,750,761	-		LU632_RS14430	0.53	-0.2
2,750,848	-		LU632_RS14430	0.61	-2.6
2,751,021	+		LU632_RS14430	0.78	+0.7
2,751,021	+		LU632_RS14430	0.78	+1.3
2,751,022	-		LU632_RS14430	0.78	-0.8
2,751,022	-		LU632_RS14430	0.78	-1.6