Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14345

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
2,738,948	+		LU632_RS14335	0.82	+0.9
2,738,948	+		LU632_RS14335	0.82	-1.6
2,738,948	+		LU632_RS14335	0.82	-0.2
2,738,949	-		LU632_RS14335	0.82	-3.5
2,738,949	-		LU632_RS14335	0.82	+0.0
2,738,950	+		LU632_RS14335	0.82	+0.6
2,738,950	+		LU632_RS14335	0.82	+0.7
2,738,950	+		LU632_RS14335	0.82	-0.5
2,738,950	+		LU632_RS14335	0.82	+0.9
2,738,951	-		LU632_RS14335	0.83	-2.7
2,738,951	-		LU632_RS14335	0.83	-0.4
2,738,951	-		LU632_RS14335	0.83	+2.3
2,739,144	+		LU632_RS14340	0.29	-0.9
2,739,144	+		LU632_RS14340	0.29	-0.3
2,739,189	-		LU632_RS14340	0.39	+3.5
2,739,644	+		LU632_RS14345	0.68	-2.5
2,739,644	+		LU632_RS14345	0.68	-2.7
2,739,645	-		LU632_RS14345	0.69	+0.0
2,739,647	-		LU632_RS14345	0.69	-1.6
2,739,891	-		LU632_RS14350	0.29	+1.2
2,739,907	-		LU632_RS14350	0.34	-2.7
2,739,907	-		LU632_RS14350	0.34	+1.3
2,739,907	-		LU632_RS14350	0.34	+0.4
2,739,908	+		LU632_RS14350	0.34	+5.1
2,739,959	+		LU632_RS14350	0.49	+1.0
2,739,960	-		LU632_RS14350	0.50	+1.3
2,739,960	-		LU632_RS14350	0.50	+0.9
2,739,960	-		LU632_RS14350	0.50	-1.6
2,739,960	-		LU632_RS14350	0.50	+2.5
2,739,960	-		LU632_RS14350	0.50	+1.7
2,739,960	-		LU632_RS14350	0.50	-3.3
2,740,132	+				+0.6
2,740,132	+				-1.6
2,740,132	+				-2.1
2,740,132	+				+2.5
2,740,132	+				-2.1
2,740,133	-				-3.1
2,740,138	+				-3.6
2,740,168	+		LU632_RS14355	0.10	-3.0
2,740,211	-		LU632_RS14355	0.20	+1.0
2,740,211	-		LU632_RS14355	0.20	+0.2
2,740,254	+		LU632_RS14355	0.30	-0.6
2,740,254	+		LU632_RS14355	0.30	+0.9
2,740,255	-		LU632_RS14355	0.30	-1.2
2,740,337	-		LU632_RS14355	0.49	+0.4
2,740,340	+		LU632_RS14355	0.50	-0.3
2,740,340	+		LU632_RS14355	0.50	+0.7
2,740,341	-		LU632_RS14355	0.50	-0.9
2,740,341	-		LU632_RS14355	0.50	+2.3
2,740,341	-		LU632_RS14355	0.50	+1.7
2,740,406	+		LU632_RS14355	0.65	+0.8
2,740,533	+				+2.5
2,740,628	-				+1.3
2,740,628	-				-2.9
2,740,637	-		LU632_RS14360	0.12	-1.9
2,740,645	+		LU632_RS14360	0.15	-1.9
2,740,646	-		LU632_RS14360	0.16	-1.3
2,740,646	-		LU632_RS14360	0.16	+1.9
2,740,649	+		LU632_RS14360	0.17	+1.2
2,740,650	-		LU632_RS14360	0.17	+1.7
2,740,699	+		LU632_RS14360	0.38	-3.7