Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11345

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
2,166,428	+				+0.9
2,166,437	+				+1.0
2,166,492	-				+1.0
2,166,492	-				-2.5
2,166,538	+				+2.4
2,166,538	+				+1.0
2,166,544	-				-0.9
2,166,561	+				-1.3
2,166,561	+				-0.2
2,166,562	-				+2.0
2,166,577	+				-0.3
2,166,578	-				-1.2
2,166,578	-				-1.6
2,166,588	+				-3.1
2,167,073	-				-0.4
2,167,216	-				+1.3
2,167,280	-				-2.1
2,167,306	+				+2.2
2,167,306	+				-0.7
2,167,307	-				+0.9
2,167,307	-				+3.1
2,167,345	-				+2.6
2,167,957	+		LU632_RS11345	0.85	-1.7
2,168,092	+				-2.4
2,168,095	+				+0.7
2,168,096	-				-1.1
2,168,160	+		LU632_RS11350	0.11	+1.0
2,168,160	+		LU632_RS11350	0.11	+0.4
2,168,215	+		LU632_RS11350	0.16	-3.0
2,168,256	-		LU632_RS11350	0.20	+3.7
2,168,256	-		LU632_RS11350	0.20	-3.2
2,168,256	-		LU632_RS11350	0.20	+1.6
2,168,289	+		LU632_RS11350	0.24	-2.3
2,168,292	+		LU632_RS11350	0.24	+0.4
2,168,295	+		LU632_RS11350	0.24	-0.6
2,168,324	+		LU632_RS11350	0.27	-0.9
2,168,400	+		LU632_RS11350	0.34	-1.3
2,168,439	+		LU632_RS11350	0.38	-2.1
2,168,448	+		LU632_RS11350	0.39	-0.5
2,168,535	-		LU632_RS11350	0.48	+3.5
2,168,535	-		LU632_RS11350	0.48	-2.8
2,168,591	+		LU632_RS11350	0.53	+2.6
2,168,597	+		LU632_RS11350	0.54	+0.7
2,168,597	+		LU632_RS11350	0.54	-2.6
2,168,683	-		LU632_RS11350	0.62	-0.1
2,168,708	-		LU632_RS11350	0.65	+3.3
2,168,858	+		LU632_RS11350	0.79	+4.0
2,168,859	-		LU632_RS11350	0.79	+0.6