Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09780

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
1,858,562	+	pflB	LU632_RS09775	0.60	-0.7
1,858,562	+	pflB	LU632_RS09775	0.60	+0.3
1,858,592	-	pflB	LU632_RS09775	0.61	+0.3
1,858,600	+	pflB	LU632_RS09775	0.62	+2.0
1,858,618	-	pflB	LU632_RS09775	0.62	-2.6
1,858,618	-	pflB	LU632_RS09775	0.62	-0.1
1,858,618	-	pflB	LU632_RS09775	0.62	+1.9
1,858,755	+	pflB	LU632_RS09775	0.68	-2.3
1,858,774	+	pflB	LU632_RS09775	0.69	-1.8
1,858,826	-	pflB	LU632_RS09775	0.71	-2.8
1,858,865	+	pflB	LU632_RS09775	0.73	-0.1
1,858,874	-	pflB	LU632_RS09775	0.74	+2.7
1,858,889	-	pflB	LU632_RS09775	0.74	+0.7
1,858,889	-	pflB	LU632_RS09775	0.74	-4.1
1,858,945	+	pflB	LU632_RS09775	0.77	+2.2
1,859,017	+	pflB	LU632_RS09775	0.80	-2.0
1,859,019	+	pflB	LU632_RS09775	0.80	-1.5
1,859,020	-	pflB	LU632_RS09775	0.80	-2.1
1,859,030	+	pflB	LU632_RS09775	0.80	+1.4
1,859,031	-	pflB	LU632_RS09775	0.80	-0.8
1,859,031	-	pflB	LU632_RS09775	0.80	+2.4
1,859,100	+	pflB	LU632_RS09775	0.83	-0.1
1,859,209	+	pflB	LU632_RS09775	0.88	-1.5
1,859,209	+	pflB	LU632_RS09775	0.88	-1.6
1,859,209	+	pflB	LU632_RS09775	0.88	-2.5
1,859,209	+	pflB	LU632_RS09775	0.88	-2.5
1,859,211	+	pflB	LU632_RS09775	0.88	+1.2
1,859,212	-	pflB	LU632_RS09775	0.88	+2.6
1,859,368	-				-0.7
1,859,368	-				+0.3
1,859,485	-				+2.5
1,859,493	+				-0.2
1,859,582	-				+0.4
1,859,582	-				+1.7
1,859,633	+				-3.1
1,859,772	-	focA	LU632_RS09780	0.25	-2.7
1,859,774	+	focA	LU632_RS09780	0.25	+3.6
1,859,775	-	focA	LU632_RS09780	0.26	-0.7
1,859,780	+	focA	LU632_RS09780	0.26	-2.0
1,859,781	-	focA	LU632_RS09780	0.26	+0.1
1,859,781	-	focA	LU632_RS09780	0.26	-2.1
1,859,783	+	focA	LU632_RS09780	0.27	-1.5
1,859,784	-	focA	LU632_RS09780	0.27	-1.1
1,859,784	-	focA	LU632_RS09780	0.27	-1.7
1,859,841	-	focA	LU632_RS09780	0.33	+1.0
1,859,841	-	focA	LU632_RS09780	0.33	+1.7
1,859,841	-	focA	LU632_RS09780	0.33	-2.3
1,859,847	-	focA	LU632_RS09780	0.34	+1.6
1,859,893	-	focA	LU632_RS09780	0.39	+1.3
1,859,893	-	focA	LU632_RS09780	0.39	+0.1
1,859,970	+	focA	LU632_RS09780	0.48	+2.0
1,859,971	-	focA	LU632_RS09780	0.49	-2.3
1,859,996	+	focA	LU632_RS09780	0.51	+1.5
1,860,058	+	focA	LU632_RS09780	0.59	+1.6
1,860,067	-	focA	LU632_RS09780	0.60	-2.6
1,860,125	+	focA	LU632_RS09780	0.67	+0.7
1,860,125	+	focA	LU632_RS09780	0.67	+2.0
1,860,126	-	focA	LU632_RS09780	0.67	-1.1
1,860,126	-	focA	LU632_RS09780	0.67	+0.7
1,860,126	-	focA	LU632_RS09780	0.67	-0.1
1,860,126	-	focA	LU632_RS09780	0.67	+1.8
1,860,126	-	focA	LU632_RS09780	0.67	+0.4
1,860,126	-	focA	LU632_RS09780	0.67	+2.1
1,860,201	+	focA	LU632_RS09780	0.75	-2.6
1,860,256	+	focA	LU632_RS09780	0.82	-2.3
1,860,257	-	focA	LU632_RS09780	0.82	+0.1
1,860,278	+	focA	LU632_RS09780	0.84	+2.2
1,860,279	-	focA	LU632_RS09780	0.85	-1.3
1,860,282	+	focA	LU632_RS09780	0.85	-1.5
1,860,417	+				-3.2
1,860,429	+				-0.8
1,860,718	-				+2.0
1,860,721	+				-3.1
1,860,735	-				+1.6
1,860,753	+				-0.5
1,860,879	-				-2.0
1,860,966	+		LU632_RS09785	0.11	+1.5
1,860,967	-		LU632_RS09785	0.11	+1.8
1,861,007	+		LU632_RS09785	0.13	-0.1
1,861,007	+		LU632_RS09785	0.13	-1.1
1,861,029	+		LU632_RS09785	0.14	-2.6
1,861,029	+		LU632_RS09785	0.14	-1.5
1,861,029	+		LU632_RS09785	0.14	+2.3
1,861,029	+		LU632_RS09785	0.14	-3.1
1,861,030	-		LU632_RS09785	0.14	+0.3
1,861,136	+		LU632_RS09785	0.20	-1.1
1,861,159	-		LU632_RS09785	0.22	-0.1
1,861,169	-		LU632_RS09785	0.22	-0.4
1,861,247	+		LU632_RS09785	0.27	+0.7
1,861,257	+		LU632_RS09785	0.27	+1.5
1,861,267	+		LU632_RS09785	0.28	+0.5
1,861,328	-		LU632_RS09785	0.31	-0.6
1,861,330	+		LU632_RS09785	0.31	-2.0
1,861,341	-		LU632_RS09785	0.32	+1.6
1,861,360	+		LU632_RS09785	0.33	-0.7
1,861,369	+		LU632_RS09785	0.34	-1.7
1,861,369	+		LU632_RS09785	0.34	-3.7
1,861,370	-		LU632_RS09785	0.34	-3.0