Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09495

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
1,798,041	+		LU632_RS09490	0.40	+1.6
1,798,041	+		LU632_RS09490	0.40	+0.6
1,798,136	+		LU632_RS09490	0.46	+2.5
1,798,182	+		LU632_RS09490	0.49	-1.6
1,798,182	+		LU632_RS09490	0.49	+0.3
1,798,194	+		LU632_RS09490	0.49	+2.1
1,798,221	+		LU632_RS09490	0.51	-1.4
1,798,394	+		LU632_RS09490	0.62	+1.5
1,798,440	-		LU632_RS09490	0.65	-0.8
1,798,440	-		LU632_RS09490	0.65	+1.2
1,798,440	-		LU632_RS09490	0.65	+0.6
1,798,482	+		LU632_RS09490	0.68	+1.5
1,798,564	+		LU632_RS09490	0.73	-0.6
1,798,599	-		LU632_RS09490	0.75	+1.9
1,798,724	+		LU632_RS09490	0.83	+3.7
1,798,725	-		LU632_RS09490	0.83	+0.2
1,798,736	+		LU632_RS09490	0.84	+0.9
1,798,736	+		LU632_RS09490	0.84	-0.1
1,798,849	-				-2.9
1,798,884	+				-1.1
1,798,898	+				+0.2
1,798,923	-				+0.8
1,799,005	+				-0.2
1,799,007	+				-1.1
1,799,008	-				+1.4
1,799,008	-				-0.3
1,799,115	+				+0.9
1,799,116	-				-0.5
1,799,407	-		LU632_RS09495	0.27	-3.0
1,799,407	-		LU632_RS09495	0.27	+1.8
1,799,407	-		LU632_RS09495	0.27	-1.9
1,799,418	-		LU632_RS09495	0.27	+0.7
1,799,418	-		LU632_RS09495	0.27	-1.1
1,799,456	+		LU632_RS09495	0.30	+2.2
1,799,457	-		LU632_RS09495	0.30	+1.6
1,799,457	-		LU632_RS09495	0.30	-0.1
1,799,458	+		LU632_RS09495	0.30	+1.9
1,799,459	-		LU632_RS09495	0.30	-1.9
1,799,602	-		LU632_RS09495	0.39	-1.9
1,799,685	+		LU632_RS09495	0.45	+1.1
1,799,751	+		LU632_RS09495	0.49	-1.4
1,799,780	-		LU632_RS09495	0.51	-2.2
1,800,015	+		LU632_RS09495	0.66	+0.5
1,800,062	-		LU632_RS09495	0.69	-0.4
1,800,190	+		LU632_RS09495	0.77	+2.1
1,800,241	-		LU632_RS09495	0.80	-1.5
1,800,285	-		LU632_RS09495	0.83	+0.8
1,800,324	+		LU632_RS09495	0.86	+1.2
1,800,328	+		LU632_RS09495	0.86	+2.1
1,800,328	+		LU632_RS09495	0.86	+0.3
1,800,328	+		LU632_RS09495	0.86	-2.2
1,800,328	+		LU632_RS09495	0.86	+3.8
1,800,329	-		LU632_RS09495	0.86	-1.4
1,800,334	-		LU632_RS09495	0.86	+0.9
1,800,352	-		LU632_RS09495	0.87	-0.6
1,800,499	+				-3.0
1,801,416	-				-2.7
1,801,425	+				+0.9
1,801,459	-				-3.4