Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfbA and rfbC are separated by 2 nucleotides rfbC and LU632_RS08870 are separated by 142 nucleotides LU632_RS08870 and LU632_RS08875 are separated by 29 nucleotides
LU632_RS08860: rfbA - glucose-1-phosphate thymidylyltransferase RfbA, at 1,673,189 to 1,674,070
rfbA
LU632_RS08865: rfbC - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,674,073 to 1,674,618
rfbC
LU632_RS08870: LU632_RS08870 - glycosyltransferase family 2 protein, at 1,674,761 to 1,675,702
_RS08870
LU632_RS08875: LU632_RS08875 - hypothetical protein, at 1,675,732 to 1,677,027
_RS08875
Position (kb) 1674
1675
1676 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1673.803 kb on + strand, within rfbA at 1673.807 kb on + strand, within rfbA at 1673.808 kb on - strand, within rfbA at 1673.808 kb on - strand, within rfbA at 1673.808 kb on - strand, within rfbA at 1673.899 kb on + strand, within rfbA at 1673.916 kb on + strand, within rfbA at 1673.916 kb on + strand, within rfbA at 1673.916 kb on + strand, within rfbA at 1673.977 kb on + strand, within rfbA at 1674.222 kb on + strand, within rfbC at 1674.270 kb on + strand, within rfbC at 1674.317 kb on + strand, within rfbC at 1674.327 kb on + strand, within rfbC at 1674.387 kb on + strand, within rfbC at 1674.387 kb on + strand, within rfbC at 1674.431 kb on - strand, within rfbC at 1674.431 kb on - strand, within rfbC at 1674.463 kb on - strand, within rfbC at 1674.475 kb on + strand, within rfbC at 1674.476 kb on - strand, within rfbC at 1674.479 kb on - strand, within rfbC at 1674.498 kb on + strand, within rfbC at 1674.498 kb on + strand, within rfbC at 1674.498 kb on + strand, within rfbC at 1674.503 kb on + strand, within rfbC at 1674.619 kb on + strand at 1674.746 kb on + strand at 1674.781 kb on + strand at 1674.914 kb on - strand, within LU632_RS08870 at 1674.924 kb on - strand, within LU632_RS08870 at 1675.090 kb on - strand, within LU632_RS08870 at 1675.133 kb on - strand, within LU632_RS08870 at 1675.420 kb on + strand, within LU632_RS08870 at 1675.420 kb on - strand, within LU632_RS08870 at 1675.422 kb on + strand, within LU632_RS08870 at 1675.423 kb on - strand, within LU632_RS08870 at 1675.423 kb on - strand, within LU632_RS08870 at 1676.260 kb on - strand, within LU632_RS08875 at 1676.318 kb on - strand, within LU632_RS08875 at 1676.347 kb on - strand, within LU632_RS08875 at 1676.347 kb on - strand, within LU632_RS08875 at 1676.370 kb on + strand, within LU632_RS08875
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 1,673,803 + rfbA LU632_RS08860 0.70 -3.3 1,673,807 + rfbA LU632_RS08860 0.70 -0.5 1,673,808 - rfbA LU632_RS08860 0.70 -3.2 1,673,808 - rfbA LU632_RS08860 0.70 -4.3 1,673,808 - rfbA LU632_RS08860 0.70 -2.9 1,673,899 + rfbA LU632_RS08860 0.80 -3.0 1,673,916 + rfbA LU632_RS08860 0.82 -1.8 1,673,916 + rfbA LU632_RS08860 0.82 +0.0 1,673,916 + rfbA LU632_RS08860 0.82 -1.0 1,673,977 + rfbA LU632_RS08860 0.89 -0.0 1,674,222 + rfbC LU632_RS08865 0.27 -3.6 1,674,270 + rfbC LU632_RS08865 0.36 -2.3 1,674,317 + rfbC LU632_RS08865 0.45 -3.2 1,674,327 + rfbC LU632_RS08865 0.47 -3.3 1,674,387 + rfbC LU632_RS08865 0.58 -1.8 1,674,387 + rfbC LU632_RS08865 0.58 +1.6 1,674,431 - rfbC LU632_RS08865 0.66 -2.5 1,674,431 - rfbC LU632_RS08865 0.66 -1.9 1,674,463 - rfbC LU632_RS08865 0.71 -2.0 1,674,475 + rfbC LU632_RS08865 0.74 -1.7 1,674,476 - rfbC LU632_RS08865 0.74 -2.9 1,674,479 - rfbC LU632_RS08865 0.74 -1.6 1,674,498 + rfbC LU632_RS08865 0.78 -1.5 1,674,498 + rfbC LU632_RS08865 0.78 +0.4 1,674,498 + rfbC LU632_RS08865 0.78 +0.8 1,674,503 + rfbC LU632_RS08865 0.79 +1.0 1,674,619 + -1.6 1,674,746 + +1.4 1,674,781 + -0.4 1,674,914 - LU632_RS08870 0.16 -3.0 1,674,924 - LU632_RS08870 0.17 -2.6 1,675,090 - LU632_RS08870 0.35 -4.6 1,675,133 - LU632_RS08870 0.39 -2.4 1,675,420 + LU632_RS08870 0.70 -3.3 1,675,420 - LU632_RS08870 0.70 -2.8 1,675,422 + LU632_RS08870 0.70 -1.8 1,675,423 - LU632_RS08870 0.70 -0.6 1,675,423 - LU632_RS08870 0.70 -0.1 1,676,260 - LU632_RS08875 0.41 -2.5 1,676,318 - LU632_RS08875 0.45 +0.4 1,676,347 - LU632_RS08875 0.47 +1.3 1,676,347 - LU632_RS08875 0.47 -3.8 1,676,370 + LU632_RS08875 0.49 -2.6
Or see this region's nucleotide sequence