Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08540

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
1,602,623	+	mglC	LU632_RS08530	0.88	-1.5
1,602,642	+				-1.5
1,602,642	+				+0.2
1,602,642	+				-0.9
1,602,643	-				-2.7
1,602,643	-				-0.0
1,602,670	-				-2.2
1,602,670	-				+0.7
1,602,672	-				+0.9
1,602,672	-				-2.1
1,602,672	-				+0.5
1,602,672	-				+1.1
1,602,672	-				+0.1
1,602,724	-				+1.1
1,603,410	+				+0.2
1,603,483	-				+1.1
1,603,529	+				-3.4
1,603,530	-				+0.4
1,603,532	+				-3.2
1,603,574	+				-0.1
1,603,574	+				-0.9
1,603,574	+				-2.2
1,603,575	-				-0.7
1,603,575	-				+1.0
1,603,575	-				-2.2
1,603,661	+		LU632_RS08540	0.34	-2.8
1,603,726	+		LU632_RS08540	0.66	-2.7
1,603,901	+				-1.9
1,603,901	+				+1.9
1,603,901	+				+1.2
1,603,902	-				-4.1
1,603,902	-				-2.4
1,603,907	+				+1.1
1,603,907	+				-0.9
1,603,908	-				+0.5
1,603,908	-				+2.5
1,603,908	-				-2.5
1,603,924	+				-0.9
1,603,924	+				-1.5
1,603,924	+				-1.2
1,603,924	+				+0.7
1,603,924	+				-2.1
1,603,925	-				-3.6
1,603,955	+				-1.5
1,603,979	+				+2.7
1,603,998	+				+2.6
1,603,998	+				-2.2
1,603,998	+				+0.9
1,603,999	-				-1.9
1,603,999	-				-1.5
1,603,999	-				+0.9
1,603,999	-				+1.0
1,603,999	-				+0.0
1,603,999	-				+3.1
1,603,999	-				+1.3
1,604,068	-				-1.7
1,604,068	-				-2.1
1,604,069	+				-3.5
1,604,070	-				+1.5
1,604,070	-				-3.6
1,604,070	-				-0.5
1,604,070	-				-0.9
1,604,075	+				-2.1
1,604,075	+				-0.2
1,604,076	-				+0.9
1,604,188	+	sanA	LU632_RS08545	0.13	-1.1
1,604,345	+	sanA	LU632_RS08545	0.31	+1.1
1,604,395	-	sanA	LU632_RS08545	0.37	-3.2
1,604,403	+	sanA	LU632_RS08545	0.38	-1.6
1,604,426	+	sanA	LU632_RS08545	0.41	+0.5
1,604,427	-	sanA	LU632_RS08545	0.41	-0.9
1,604,500	-	sanA	LU632_RS08545	0.50	-0.6
1,604,536	+	sanA	LU632_RS08545	0.54	-0.9
1,604,536	+	sanA	LU632_RS08545	0.54	+0.8
1,604,536	+	sanA	LU632_RS08545	0.54	-2.8
1,604,536	+	sanA	LU632_RS08545	0.54	+0.1
1,604,536	+	sanA	LU632_RS08545	0.54	-1.2
1,604,537	-	sanA	LU632_RS08545	0.54	+0.1
1,604,537	-	sanA	LU632_RS08545	0.54	+2.4
1,604,638	-	sanA	LU632_RS08545	0.66	-3.0
1,604,639	+	sanA	LU632_RS08545	0.66	-2.6
1,604,675	+	sanA	LU632_RS08545	0.70	+1.2
1,604,676	-	sanA	LU632_RS08545	0.70	-0.6
1,604,694	+	sanA	LU632_RS08545	0.73	-2.4
1,604,697	-	sanA	LU632_RS08545	0.73	+2.7
1,604,697	-	sanA	LU632_RS08545	0.73	-1.9
1,604,730	-	sanA	LU632_RS08545	0.77	+1.6
1,604,730	-	sanA	LU632_RS08545	0.77	-0.7
1,604,732	+	sanA	LU632_RS08545	0.77	-1.1
1,604,740	-	sanA	LU632_RS08545	0.78	-2.9
1,604,740	-	sanA	LU632_RS08545	0.78	+0.1
1,604,740	-	sanA	LU632_RS08545	0.78	+1.3
1,604,742	+	sanA	LU632_RS08545	0.78	-0.3
1,604,743	-	sanA	LU632_RS08545	0.78	-1.9
1,604,759	+	sanA	LU632_RS08545	0.80	+4.2